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Protein

30S ribosomal protein S3

Gene

rpsC

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-1692-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S3
Gene namesi
Name:rpsC
Synonyms:rps3
Ordered Locus Names:TTHA1686
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Pathology & Biotechi

Chemistry databases

DrugBankiDB08185 2-METHYLTHIO-N6-ISOPENTENYL-ADENOSINE-5'-MONOPHOSPHATE

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved1 Publication
ChainiPRO_00001302232 – 23930S ribosomal protein S3Add BLAST238

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.

Protein-protein interaction databases

STRINGi300852.TTHA1686

Structurei

Secondary structure

1239
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Turni7 – 13Combined sources7
Beta strandi14 – 16Combined sources3
Beta strandi19 – 21Combined sources3
Turni26 – 28Combined sources3
Helixi29 – 44Combined sources16
Turni45 – 50Combined sources6
Beta strandi52 – 55Combined sources4
Beta strandi59 – 62Combined sources4
Beta strandi63 – 66Combined sources4
Beta strandi67 – 71Combined sources5
Helixi73 – 75Combined sources3
Beta strandi79 – 82Combined sources4
Helixi83 – 94Combined sources12
Beta strandi95 – 97Combined sources3
Beta strandi102 – 105Combined sources4
Helixi109 – 111Combined sources3
Helixi113 – 125Combined sources13
Helixi130 – 143Combined sources14
Beta strandi147 – 153Combined sources7
Turni157 – 159Combined sources3
Beta strandi169 – 171Combined sources3
Beta strandi175 – 177Combined sources3
Helixi178 – 180Combined sources3
Beta strandi182 – 187Combined sources6
Beta strandi188 – 190Combined sources3
Beta strandi195 – 197Combined sources3
Beta strandi198 – 203Combined sources6

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FJGX-ray3.00C1-239[»]
1HNWX-ray3.40C1-239[»]
1HNXX-ray3.40C1-239[»]
1HNZX-ray3.30C1-239[»]
1HR0X-ray3.20C1-239[»]
1I94X-ray3.20C2-239[»]
1I95X-ray4.50C2-239[»]
1I96X-ray4.20C2-239[»]
1I97X-ray4.50C2-239[»]
1IBKX-ray3.31C1-239[»]
1IBLX-ray3.11C1-239[»]
1IBMX-ray3.31C1-239[»]
1J5EX-ray3.05C1-239[»]
1L1Umodel-C1-207[»]
1ML5electron microscopy14.00F1-239[»]
1N32X-ray3.00C1-239[»]
1N33X-ray3.35C1-239[»]
1N34X-ray3.80C1-239[»]
1N36X-ray3.65C1-239[»]
1VVJX-ray3.44QC/XC1-239[»]
1VY4X-ray2.60AC/CC1-239[»]
1VY5X-ray2.55AC/CC1-239[»]
1VY6X-ray2.90AC/CC1-239[»]
1VY7X-ray2.80AC/CC1-239[»]
1XMOX-ray3.25C1-239[»]
1XMQX-ray3.00C1-239[»]
1XNQX-ray3.05C1-239[»]
1XNRX-ray3.10C1-239[»]
2E5LX-ray3.30C2-239[»]
2F4VX-ray3.80C1-239[»]
2HHHX-ray3.35C1-239[»]
2UU9X-ray3.10C2-239[»]
2UUAX-ray2.90C2-239[»]
2UUBX-ray2.80C2-239[»]
2UUCX-ray3.10C2-239[»]
2UXBX-ray3.10C2-239[»]
2UXCX-ray2.90C2-239[»]
2UXDX-ray3.20C2-239[»]
2VQEX-ray2.50C1-239[»]
2VQFX-ray2.90C1-239[»]
2ZM6X-ray3.30C2-239[»]
3OTOX-ray3.69C1-239[»]
3T1HX-ray3.11C1-239[»]
3T1YX-ray2.80C1-239[»]
4AQYX-ray3.50C1-239[»]
4B3MX-ray2.90C1-239[»]
4B3RX-ray3.00C1-239[»]
4B3SX-ray3.15C1-239[»]
4B3TX-ray3.00C1-239[»]
4DR1X-ray3.60C1-239[»]
4DR2X-ray3.25C1-239[»]
4DR3X-ray3.35C1-239[»]
4DR4X-ray3.97C1-239[»]
4DR5X-ray3.45C1-239[»]
4DR6X-ray3.30C1-239[»]
4DR7X-ray3.75C1-239[»]
4DUYX-ray3.39C1-239[»]
4DUZX-ray3.65C1-239[»]
4DV0X-ray3.85C1-239[»]
4DV1X-ray3.85C1-239[»]
4DV2X-ray3.65C1-239[»]
4DV3X-ray3.55C1-239[»]
4DV4X-ray3.65C1-239[»]
4DV5X-ray3.68C1-239[»]
4DV6X-ray3.30C1-239[»]
4DV7X-ray3.29C1-239[»]
4GKJX-ray3.30C2-207[»]
4GKKX-ray3.20C2-207[»]
4JI0X-ray3.49C1-239[»]
4JI1X-ray3.14C1-239[»]
4JI2X-ray3.64C1-239[»]
4JI3X-ray3.35C1-239[»]
4JI4X-ray3.69C1-239[»]
4JI5X-ray3.85C1-239[»]
4JI6X-ray3.55C1-239[»]
4JI7X-ray3.50C1-239[»]
4JI8X-ray3.74C1-239[»]
4JV5X-ray3.16C2-207[»]
4JYAX-ray3.10C2-207[»]
4K0KX-ray3.40C2-208[»]
4KHPX-ray3.10C2-207[»]
4L47X-ray3.22QC/XC1-239[»]
4L71X-ray3.90QC/XC1-239[»]
4LELX-ray3.90QC/XC1-239[»]
4LF4X-ray3.34C1-239[»]
4LF5X-ray3.75C1-239[»]
4LF6X-ray3.31C1-239[»]
4LF7X-ray3.15C1-239[»]
4LF8X-ray3.15C1-239[»]
4LF9X-ray3.28C1-239[»]
4LFAX-ray3.65C1-239[»]
4LFBX-ray3.01C1-239[»]
4LFCX-ray3.60C1-239[»]
4LFZX-ray3.92QC/XC1-239[»]
4LNTX-ray2.94QC/XC1-239[»]
4LSKX-ray3.48QC/XC1-239[»]
4LT8X-ray3.14QC/XC1-239[»]
4NXMX-ray3.65C1-239[»]
4NXNX-ray3.54C1-239[»]
4OX9X-ray3.80C1-239[»]
4P6FX-ray3.60QC/XC1-239[»]
4P70X-ray3.68QC/XC1-239[»]
4TUAX-ray3.60QC/XC1-239[»]
4TUBX-ray3.60QC/XC1-239[»]
4TUCX-ray3.60QC/XC1-239[»]
4TUDX-ray3.60QC/XC1-239[»]
4TUEX-ray3.50QC/XC1-239[»]
4V42X-ray5.50AF1-239[»]
4V49X-ray8.70C2-207[»]
4V4AX-ray9.50C2-207[»]
4V4PX-ray5.50F1-239[»]
4V4RX-ray5.90AC1-239[»]
4V4SX-ray6.76AC1-239[»]
4V4TX-ray6.46AC1-239[»]
4V4XX-ray5.00AF1-239[»]
4V4YX-ray5.50AF1-239[»]
4V4ZX-ray4.51AF1-239[»]
4V51X-ray2.80AC/CC2-239[»]
4V5AX-ray3.50AC/CC2-239[»]
4V5CX-ray3.30AC/CC1-239[»]
4V5DX-ray3.50AC/CC1-239[»]
4V5EX-ray3.45AC/CC1-239[»]
4V5FX-ray3.60AC/CC1-239[»]
4V5GX-ray3.60AC/CC1-239[»]
4V5JX-ray3.10AC/CC1-239[»]
4V5KX-ray3.20AC/CC1-239[»]
4V5LX-ray3.10AC1-239[»]
4V5Melectron microscopy7.80AC1-239[»]
4V5Nelectron microscopy7.60AC1-239[»]
4V5PX-ray3.10AC/CC1-239[»]
4V5QX-ray3.10AC/CC1-239[»]
4V5RX-ray3.10AC/CC1-239[»]
4V5SX-ray3.10AC/CC1-239[»]
4V68electron microscopy6.40AC2-208[»]
4V6AX-ray3.10AC/CC1-239[»]
4V6FX-ray3.10BF/CF1-239[»]
4V6GX-ray3.50AF/CF1-239[»]
4V7JX-ray3.30Ac/Bc1-239[»]
4V7KX-ray3.60Ac/Bc1-239[»]
4V7LX-ray3.00AC/CC1-239[»]
4V7MX-ray3.45AC/CC1-239[»]
4V7WX-ray3.00AC/CC1-239[»]
4V7XX-ray3.00AC/CC1-239[»]
4V7YX-ray3.00AC/CC1-239[»]
4V7ZX-ray3.10AC/CC1-239[»]
4V87X-ray3.10BF/CF1-239[»]
4V8AX-ray3.20CC/DC1-239[»]
4V8BX-ray3.00AF/CF1-239[»]
4V8CX-ray3.30CF/DF1-239[»]
4V8DX-ray3.00AF/CF1-239[»]
4V8EX-ray3.30BF/DF1-239[»]
4V8FX-ray3.30BF/CF1-239[»]
4V8GX-ray3.00AC/CC1-239[»]
4V8HX-ray3.10AC/CC1-239[»]
4V8IX-ray2.70AC/CC1-239[»]
4V8JX-ray3.90AC/CC1-239[»]
4V8NX-ray3.10AC/CC1-239[»]
4V8OX-ray3.80AC1-239[»]
4V8QX-ray3.10BC1-239[»]
4V8UX-ray3.70AC/CC1-239[»]
4V8XX-ray3.35AC/CC1-239[»]
4V90X-ray2.95AC1-239[»]
4V95X-ray3.20AC/CC1-239[»]
4V97X-ray3.52AC/CC1-239[»]
4V9AX-ray3.30AF/CF1-239[»]
4V9BX-ray3.10AF/CF1-239[»]
4V9HX-ray2.86AC2-207[»]
4V9IX-ray3.30AC/CC2-207[»]
4V9RX-ray3.00AC/CC1-239[»]
4V9SX-ray3.10AC/CC1-239[»]
4W2EX-ray2.90c1-239[»]
4W2FX-ray2.40AC/CC1-239[»]
4W2GX-ray2.55AC/CC1-239[»]
4W2HX-ray2.70AC/CC1-239[»]
4W2IX-ray2.70AC/CC1-239[»]
4W4GX-ray3.30QC/XC1-239[»]
4WPOX-ray2.80BC/DC1-239[»]
4WQ1X-ray3.1022/2E1-239[»]
4WQFX-ray2.80BC/DC1-239[»]
4WQRX-ray3.1522/2E1-239[»]
4WQUX-ray2.80BC/DC1-239[»]
4WQYX-ray2.80BC/DC1-239[»]
4WR6X-ray3.0522/2E1-239[»]
4WRAX-ray3.0522/2E1-239[»]
4WROX-ray3.0522/2E1-239[»]
4WSDX-ray2.9522/2E1-239[»]
4WSMX-ray3.3022/2E1-239[»]
4WT1X-ray3.0522/2E1-239[»]
4WT8X-ray3.40AC1-238[»]
BC2-207[»]
4WU1X-ray3.2022/2E1-239[»]
4WZDX-ray3.1022/2E1-239[»]
4WZOX-ray3.3022/2E1-239[»]
4X62X-ray3.45C2-208[»]
4X64X-ray3.35C2-208[»]
4X65X-ray3.35C2-208[»]
4X66X-ray3.45C2-208[»]
4Y4OX-ray2.301c/2c1-239[»]
4Y4PX-ray2.501c/2c1-239[»]
4YHHX-ray3.42C2-207[»]
4YPBX-ray3.40QC/XC1-239[»]
4YY3X-ray3.60C1-239[»]
4YZVX-ray3.10QC/XC1-239[»]
4Z3SX-ray2.651c/2c1-239[»]
4Z8CX-ray2.901c/2c1-239[»]
4ZERX-ray3.101c/2c2-207[»]
4ZSNX-ray3.60QC/XC1-239[»]
5A9Zelectron microscopy4.70BG2-207[»]
5AA0electron microscopy5.00BG2-207[»]
5BR8X-ray3.40C1-239[»]
5CZPX-ray3.30QC/XC1-239[»]
5D8BX-ray3.63DA/ZB1-239[»]
5DFEX-ray3.10QC/XC1-239[»]
5DOXX-ray3.101c/2c1-239[»]
5DOYX-ray2.601c/2c1-239[»]
5E7KX-ray3.2022/2E1-239[»]
5E81X-ray2.9522/2E1-239[»]
5EL4X-ray3.1522/2E1-239[»]
5EL5X-ray3.1522/2E1-239[»]
5EL6X-ray3.1022/2E1-239[»]
5EL7X-ray3.1522/2E1-239[»]
5F8KX-ray2.801c/2c2-207[»]
5FDUX-ray2.901c/2c2-207[»]
5FDVX-ray2.801c/2c2-207[»]
5HAUX-ray3.001c/2c1-239[»]
5HCPX-ray2.891c/2c1-239[»]
5HCQX-ray2.801c/2c1-239[»]
5HCRX-ray2.801c/2c1-239[»]
5HD1X-ray2.701c/2c1-239[»]
5IB7X-ray2.9922/2E1-239[»]
5IB8X-ray3.1322/2E1-239[»]
5IBBX-ray2.9622/2E1-239[»]
5IMQelectron microscopy3.80G1-239[»]
5IMRelectron microscopy-G1-239[»]
5IWAX-ray3.50C2-207[»]
5J30X-ray3.20QC/XC1-239[»]
5J3CX-ray3.04QC/XC1-239[»]
5J4BX-ray2.601c/2c1-239[»]
5J4CX-ray2.801c/2c1-239[»]
5J8BX-ray2.60c1-239[»]
5LMNelectron microscopy3.55C1-239[»]
5LMOelectron microscopy4.30C1-239[»]
5LMPelectron microscopy5.35C1-239[»]
5LMQelectron microscopy4.20C1-239[»]
5LMRelectron microscopy4.45C1-239[»]
5LMSelectron microscopy5.10C1-239[»]
5LMTelectron microscopy4.15C1-239[»]
5LMUelectron microscopy4.00C1-239[»]
5LMVelectron microscopy4.90C1-239[»]
5NDKX-ray2.9522/2E1-239[»]
5OT7electron microscopy3.80B2-208[»]
5UQ7electron microscopy3.50c2-207[»]
5UQ8electron microscopy3.20c2-207[»]
5VP2X-ray2.801c/2c1-239[»]
5W4KX-ray2.701c/2c1-239[»]
5WISX-ray2.701c/2c1-239[»]
5WITX-ray2.601c/2c1-239[»]
5WNPX-ray3.30C2-208[»]
5WNQX-ray3.50C2-207[»]
5WNRX-ray3.50C2-207[»]
5WNSX-ray3.50C2-207[»]
5WNTX-ray3.30C2-208[»]
5WNUX-ray3.40C2-208[»]
5WNVX-ray3.30C2-208[»]
6FKRX-ray3.201c/2c2-207[»]
ProteinModelPortaliP80372
SMRiP80372
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80372

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini39 – 107KH type-2Add BLAST69

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105CKE Bacteria
COG0092 LUCA
HOGENOMiHOG000210610
KOiK02982
OMAiKTNPIGN
PhylomeDBiP80372

Family and domain databases

Gene3Di3.30.1140.32, 1 hit
3.30.300.20, 1 hit
HAMAPiMF_01309_B Ribosomal_S3_B, 1 hit
InterProiView protein in InterPro
IPR004087 KH_dom
IPR015946 KH_dom-like_a/b
IPR004044 KH_dom_type_2
IPR009019 KH_sf_prok-type
IPR005704 Ribosomal_S3_bac
IPR001351 Ribosomal_S3_C
IPR036419 Ribosomal_S3_C_sf
IPR018280 Ribosomal_S3_CS
PANTHERiPTHR11760:SF19 PTHR11760:SF19, 1 hit
PfamiView protein in Pfam
PF07650 KH_2, 1 hit
PF00189 Ribosomal_S3_C, 1 hit
SMARTiView protein in SMART
SM00322 KH, 1 hit
SUPFAMiSSF54814 SSF54814, 1 hit
SSF54821 SSF54821, 1 hit
TIGRFAMsiTIGR01009 rpsC_bact, 1 hit
PROSITEiView protein in PROSITE
PS50823 KH_TYPE_2, 1 hit
PS00548 RIBOSOMAL_S3, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80372-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGNKIHPIGF RLGITRDWES RWYAGKKQYR HLLLEDQRIR GLLEKELYSA
60 70 80 90 100
GLARVDIERA ADNVAVTVHV AKPGVVIGRG GERIRVLREE LAKLTGKNVA
110 120 130 140 150
LNVQEVQNPN LSAPLVAQRV AEQIERRFAV RRAIKQAVQR VMESGAKGAK
160 170 180 190 200
VIVSGRIGGA EQARTEWAAQ GRVPLHTLRA NIDYGFALAR TTYGVLGVKA
210 220 230
YIFLGEVIGG QKPKARPELP KAEERPRRRR PAVRVKKEE
Length:239
Mass (Da):26,701
Last modified:January 23, 2007 - v3
Checksum:iAD585A1D53AC7F04
GO

Mass spectrometryi

Molecular mass is 26570 Da from positions 2 - 239. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA Translation: BAD71509.1
RefSeqiWP_008633418.1, NC_006461.1
YP_144952.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD71509; BAD71509; BAD71509
GeneIDi3168725
KEGGittj:TTHA1686
PATRICifig|300852.9.peg.1656

Similar proteinsi

Entry informationi

Entry nameiRS3_THET8
AccessioniPrimary (citable) accession number: P80372
Secondary accession number(s): Q5SHP4, Q9ACK0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1995
Last sequence update: January 23, 2007
Last modified: May 23, 2018
This is version 165 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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