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Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.
BRENDAi1.4.3.3. 5424.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 494950S ribosomal protein L34PRO_0000187493Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Structurei

Secondary structure

1
49
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 168Combined sources
Helixi18 – 225Combined sources
Helixi25 – 3713Combined sources
Beta strandi39 – 435Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R7/Y71-49[»]
1VY4X-ray2.60B7/D71-49[»]
1VY5X-ray2.55B7/D71-49[»]
1VY6X-ray2.90B7/D71-49[»]
1VY7X-ray2.80B7/D71-49[»]
4L47X-ray3.22R7/Y71-49[»]
4L71X-ray3.90R7/Y71-49[»]
4LELX-ray3.90R7/Y71-49[»]
4LFZX-ray3.92R7/Y71-49[»]
4LNTX-ray2.94R7/Y71-49[»]
4LSKX-ray3.48R7/Y71-49[»]
4LT8X-ray3.14R7/Y71-49[»]
4P6FX-ray3.60R7/Y71-49[»]
4P70X-ray3.68R7/Y71-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V4XX-ray5.00B61-49[»]
4V4YX-ray5.50B61-49[»]
4V4ZX-ray4.51B61-49[»]
4V51X-ray2.80B7/D71-49[»]
4V5AX-ray3.50B7/D71-49[»]
4V5CX-ray3.30B7/D71-49[»]
4V5DX-ray3.50B7/D71-49[»]
4V5EX-ray3.45B7/D71-49[»]
4V5FX-ray3.60B7/D71-49[»]
4V5GX-ray3.60B7/D71-49[»]
4V5JX-ray3.10B7/D71-49[»]
4V5KX-ray3.20B7/D71-49[»]
4V5LX-ray3.10B71-49[»]
4V5Melectron microscopy7.80B71-49[»]
4V5Nelectron microscopy7.60B71-49[»]
4V5PX-ray3.10B7/D71-49[»]
4V5QX-ray3.10B7/D71-49[»]
4V5RX-ray3.10B7/D71-49[»]
4V5SX-ray3.10B7/D71-49[»]
4V63X-ray3.21B7/D71-49[»]
4V67X-ray3.00B7/D71-49[»]
4V68electron microscopy6.40B71-49[»]
4V6AX-ray3.10B7/D71-49[»]
4V6FX-ray3.10A7/D71-49[»]
4V6GX-ray3.50B7/D71-49[»]
4V7JX-ray3.30A7/B71-49[»]
4V7KX-ray3.60A7/B71-49[»]
4V7LX-ray3.00B7/D71-49[»]
4V7MX-ray3.45B7/D71-49[»]
4V7PX-ray3.62B4/C41-48[»]
4V7WX-ray3.00B7/D71-49[»]
4V7XX-ray3.00B7/D71-49[»]
4V7YX-ray3.00B7/D71-49[»]
4V7ZX-ray3.10B7/D71-49[»]
4V83X-ray3.50B4/D41-48[»]
4V84X-ray3.40B4/D41-48[»]
4V87X-ray3.10A7/D71-49[»]
4V8AX-ray3.20A7/B71-49[»]
4V8BX-ray3.00B7/D71-49[»]
4V8CX-ray3.30A7/B71-49[»]
4V8DX-ray3.00B7/D71-49[»]
4V8EX-ray3.30A7/C71-49[»]
4V8FX-ray3.30A7/D71-49[»]
4V8GX-ray3.00B7/D71-49[»]
4V8HX-ray3.10B7/D71-49[»]
4V8IX-ray2.70B7/D71-49[»]
4V8JX-ray3.90B7/D71-49[»]
4V8NX-ray3.10B7/D71-49[»]
4V8OX-ray3.80B71-49[»]
4V8QX-ray3.10A71-49[»]
4V8UX-ray3.70B7/D71-49[»]
4V8XX-ray3.35B7/D71-49[»]
4V90X-ray2.95B71-48[»]
4V95X-ray3.20B7/D71-49[»]
4V97X-ray3.52B7/D71-49[»]
4V9AX-ray3.30B7/D71-49[»]
4V9BX-ray3.10B7/D71-49[»]
4V9HX-ray2.86B71-49[»]
4V9IX-ray3.30B7/D71-48[»]
4V9JX-ray3.86B7/D71-49[»]
4V9KX-ray3.50B7/D71-49[»]
4V9LX-ray3.50B7/D71-49[»]
4V9MX-ray4.00B7/D71-49[»]
4V9NX-ray3.40B7/D71-48[»]
4V9QX-ray3.40A4/C41-48[»]
4V9RX-ray3.00B7/D71-49[»]
4V9SX-ray3.10B7/D71-49[»]
4W29X-ray3.80B7/D71-49[»]
4W2EX-ray2.9071-49[»]
4W2FX-ray2.40B7/D71-49[»]
4W2GX-ray2.55B7/D71-49[»]
4W2HX-ray2.70B7/D71-49[»]
4W2IX-ray2.70B7/D71-49[»]
4WPOX-ray2.80A7/C71-49[»]
4WQFX-ray2.80A7/C71-49[»]
4WQUX-ray2.80A7/C71-49[»]
4WQYX-ray2.80A7/C71-49[»]
4WWEX-ray3.4081-48[»]
4WWTX-ray3.4081-48[»]
4XEJX-ray3.80AL34/BL341-48[»]
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80340.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.Curated

Phylogenomic databases

eggNOGiCOG0230.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P80340-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR
Length:49
Mass (Da):6,109
Last modified:March 15, 2004 - v3
Checksum:iB399FA1B7185C750
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131A → N AA sequence (Ref. 4) Curated
Sequence conflicti15 – 151T → N AA sequence (Ref. 4) Curated
Sequence conflicti47 – 471R → S (PubMed:12719542).Curated

Mass spectrometryi

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiYP_143712.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiYP_143712.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R7/Y71-49[»]
1VY4X-ray2.60B7/D71-49[»]
1VY5X-ray2.55B7/D71-49[»]
1VY6X-ray2.90B7/D71-49[»]
1VY7X-ray2.80B7/D71-49[»]
4L47X-ray3.22R7/Y71-49[»]
4L71X-ray3.90R7/Y71-49[»]
4LELX-ray3.90R7/Y71-49[»]
4LFZX-ray3.92R7/Y71-49[»]
4LNTX-ray2.94R7/Y71-49[»]
4LSKX-ray3.48R7/Y71-49[»]
4LT8X-ray3.14R7/Y71-49[»]
4P6FX-ray3.60R7/Y71-49[»]
4P70X-ray3.68R7/Y71-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V4XX-ray5.00B61-49[»]
4V4YX-ray5.50B61-49[»]
4V4ZX-ray4.51B61-49[»]
4V51X-ray2.80B7/D71-49[»]
4V5AX-ray3.50B7/D71-49[»]
4V5CX-ray3.30B7/D71-49[»]
4V5DX-ray3.50B7/D71-49[»]
4V5EX-ray3.45B7/D71-49[»]
4V5FX-ray3.60B7/D71-49[»]
4V5GX-ray3.60B7/D71-49[»]
4V5JX-ray3.10B7/D71-49[»]
4V5KX-ray3.20B7/D71-49[»]
4V5LX-ray3.10B71-49[»]
4V5Melectron microscopy7.80B71-49[»]
4V5Nelectron microscopy7.60B71-49[»]
4V5PX-ray3.10B7/D71-49[»]
4V5QX-ray3.10B7/D71-49[»]
4V5RX-ray3.10B7/D71-49[»]
4V5SX-ray3.10B7/D71-49[»]
4V63X-ray3.21B7/D71-49[»]
4V67X-ray3.00B7/D71-49[»]
4V68electron microscopy6.40B71-49[»]
4V6AX-ray3.10B7/D71-49[»]
4V6FX-ray3.10A7/D71-49[»]
4V6GX-ray3.50B7/D71-49[»]
4V7JX-ray3.30A7/B71-49[»]
4V7KX-ray3.60A7/B71-49[»]
4V7LX-ray3.00B7/D71-49[»]
4V7MX-ray3.45B7/D71-49[»]
4V7PX-ray3.62B4/C41-48[»]
4V7WX-ray3.00B7/D71-49[»]
4V7XX-ray3.00B7/D71-49[»]
4V7YX-ray3.00B7/D71-49[»]
4V7ZX-ray3.10B7/D71-49[»]
4V83X-ray3.50B4/D41-48[»]
4V84X-ray3.40B4/D41-48[»]
4V87X-ray3.10A7/D71-49[»]
4V8AX-ray3.20A7/B71-49[»]
4V8BX-ray3.00B7/D71-49[»]
4V8CX-ray3.30A7/B71-49[»]
4V8DX-ray3.00B7/D71-49[»]
4V8EX-ray3.30A7/C71-49[»]
4V8FX-ray3.30A7/D71-49[»]
4V8GX-ray3.00B7/D71-49[»]
4V8HX-ray3.10B7/D71-49[»]
4V8IX-ray2.70B7/D71-49[»]
4V8JX-ray3.90B7/D71-49[»]
4V8NX-ray3.10B7/D71-49[»]
4V8OX-ray3.80B71-49[»]
4V8QX-ray3.10A71-49[»]
4V8UX-ray3.70B7/D71-49[»]
4V8XX-ray3.35B7/D71-49[»]
4V90X-ray2.95B71-48[»]
4V95X-ray3.20B7/D71-49[»]
4V97X-ray3.52B7/D71-49[»]
4V9AX-ray3.30B7/D71-49[»]
4V9BX-ray3.10B7/D71-49[»]
4V9HX-ray2.86B71-49[»]
4V9IX-ray3.30B7/D71-48[»]
4V9JX-ray3.86B7/D71-49[»]
4V9KX-ray3.50B7/D71-49[»]
4V9LX-ray3.50B7/D71-49[»]
4V9MX-ray4.00B7/D71-49[»]
4V9NX-ray3.40B7/D71-48[»]
4V9QX-ray3.40A4/C41-48[»]
4V9RX-ray3.00B7/D71-49[»]
4V9SX-ray3.10B7/D71-49[»]
4W29X-ray3.80B7/D71-49[»]
4W2EX-ray2.9071-49[»]
4W2FX-ray2.40B7/D71-49[»]
4W2GX-ray2.55B7/D71-49[»]
4W2HX-ray2.70B7/D71-49[»]
4W2IX-ray2.70B7/D71-49[»]
4WPOX-ray2.80A7/C71-49[»]
4WQFX-ray2.80A7/C71-49[»]
4WQUX-ray2.80A7/C71-49[»]
4WQYX-ray2.80A7/C71-49[»]
4WWEX-ray3.4081-48[»]
4WWTX-ray3.4081-48[»]
4XEJX-ray3.80AL34/BL341-48[»]
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Phylogenomic databases

eggNOGiCOG0230.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.
BRENDAi1.4.3.3. 5424.

Miscellaneous databases

EvolutionaryTraceiP80340.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE.
  2. "An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains."
    Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K.
    Proc. Natl. Acad. Sci. U.S.A. 100:5724-5729(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. Boysen R.I., Schroeder W., Erdmann V.A.
    Submitted (FEB-1994) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 1-22.
  5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  6. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL34_THET8
AccessioniPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: April 29, 2015
This is version 120 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.