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Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:G1GKC-459-MONOMER
BRENDAi1.4.3.3 5424

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001874931 – 4950S ribosomal protein L34Add BLAST49

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0446

Structurei

Secondary structure

149
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi9 – 16Combined sources8
Helixi18 – 23Combined sources6
Helixi25 – 37Combined sources13

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R7/Y71-49[»]
1VY4X-ray2.60B7/D71-49[»]
1VY5X-ray2.55B7/D71-49[»]
1VY6X-ray2.90B7/D71-49[»]
1VY7X-ray2.80B7/D71-49[»]
4L47X-ray3.22R7/Y71-49[»]
4L71X-ray3.90R7/Y71-49[»]
4LELX-ray3.90R7/Y71-49[»]
4LFZX-ray3.92R7/Y71-49[»]
4LNTX-ray2.94R7/Y71-49[»]
4LSKX-ray3.48R7/Y71-49[»]
4LT8X-ray3.14R7/Y71-49[»]
4P6FX-ray3.60R7/Y71-49[»]
4P70X-ray3.68R7/Y71-49[»]
4TUAX-ray3.60R7/Y71-49[»]
4TUBX-ray3.60R7/Y71-49[»]
4TUCX-ray3.60R7/Y71-49[»]
4TUDX-ray3.60R7/Y71-49[»]
4TUEX-ray3.50R7/Y71-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V4XX-ray5.00B61-49[»]
4V4YX-ray5.50B61-49[»]
4V4ZX-ray4.51B61-49[»]
4V51X-ray2.80B7/D71-49[»]
4V5AX-ray3.50B7/D71-49[»]
4V5CX-ray3.30B7/D71-49[»]
4V5DX-ray3.50B7/D71-49[»]
4V5EX-ray3.45B7/D71-49[»]
4V5FX-ray3.60B7/D71-49[»]
4V5GX-ray3.60B7/D71-49[»]
4V5JX-ray3.10B7/D71-49[»]
4V5KX-ray3.20B7/D71-49[»]
4V5LX-ray3.10B71-49[»]
4V5Melectron microscopy7.80B71-49[»]
4V5Nelectron microscopy7.60B71-49[»]
4V5PX-ray3.10B7/D71-49[»]
4V5QX-ray3.10B7/D71-49[»]
4V5RX-ray3.10B7/D71-49[»]
4V5SX-ray3.10B7/D71-49[»]
4V63X-ray3.21B7/D71-49[»]
4V67X-ray3.00B7/D71-49[»]
4V68electron microscopy6.40B71-49[»]
4V6AX-ray3.10B7/D71-49[»]
4V6FX-ray3.10A7/D71-49[»]
4V6GX-ray3.50B7/D71-49[»]
4V7JX-ray3.30A7/B71-49[»]
4V7KX-ray3.60A7/B71-49[»]
4V7LX-ray3.00B7/D71-49[»]
4V7MX-ray3.45B7/D71-49[»]
4V7PX-ray3.62B4/C41-48[»]
4V7WX-ray3.00B7/D71-49[»]
4V7XX-ray3.00B7/D71-49[»]
4V7YX-ray3.00B7/D71-49[»]
4V7ZX-ray3.10B7/D71-49[»]
4V83X-ray3.50B4/D41-48[»]
4V84X-ray3.40B4/D41-48[»]
4V87X-ray3.10A7/D71-49[»]
4V8AX-ray3.20A7/B71-49[»]
4V8BX-ray3.00B7/D71-49[»]
4V8CX-ray3.30A7/B71-49[»]
4V8DX-ray3.00B7/D71-49[»]
4V8EX-ray3.30A7/C71-49[»]
4V8FX-ray3.30A7/D71-49[»]
4V8GX-ray3.00B7/D71-49[»]
4V8HX-ray3.10B7/D71-49[»]
4V8IX-ray2.70B7/D71-49[»]
4V8JX-ray3.90B7/D71-49[»]
4V8NX-ray3.10B7/D71-49[»]
4V8OX-ray3.80B71-49[»]
4V8QX-ray3.10A71-49[»]
4V8UX-ray3.70B7/D71-49[»]
4V8XX-ray3.35B7/D71-49[»]
4V90X-ray2.95B71-48[»]
4V95X-ray3.20B7/D71-49[»]
4V97X-ray3.52B7/D71-49[»]
4V9AX-ray3.30B7/D71-49[»]
4V9BX-ray3.10B7/D71-49[»]
4V9HX-ray2.86B71-49[»]
4V9IX-ray3.30B7/D71-48[»]
4V9JX-ray3.86B7/D71-49[»]
4V9KX-ray3.50B7/D71-49[»]
4V9LX-ray3.50B7/D71-49[»]
4V9MX-ray4.00B7/D71-49[»]
4V9NX-ray3.40B7/D71-48[»]
4V9QX-ray3.40A4/C41-48[»]
4V9RX-ray3.00B7/D71-49[»]
4V9SX-ray3.10B7/D71-49[»]
4W29X-ray3.80B7/D71-49[»]
4W2EX-ray2.9071-49[»]
4W2FX-ray2.40B7/D71-49[»]
4W2GX-ray2.55B7/D71-49[»]
4W2HX-ray2.70B7/D71-49[»]
4W2IX-ray2.70B7/D71-49[»]
4W4GX-ray3.30R7/Y71-49[»]
4WPOX-ray2.80A7/C71-49[»]
4WQ1X-ray3.10L5/P81-49[»]
4WQFX-ray2.80A7/C71-49[»]
4WQRX-ray3.15L5/P81-49[»]
4WQUX-ray2.80A7/C71-49[»]
4WQYX-ray2.80A7/C71-49[»]
4WR6X-ray3.05L5/P81-49[»]
4WRAX-ray3.05L5/P81-49[»]
4WROX-ray3.05P81-49[»]
4WSDX-ray2.95L5/P81-49[»]
4WSMX-ray3.30L5/P81-49[»]
4WT1X-ray3.05L5/P81-49[»]
4WT8X-ray3.40C8/D81-48[»]
4WU1X-ray3.20L5/P81-49[»]
4WZDX-ray3.10L5/P81-49[»]
4WZOX-ray3.30L5/P81-49[»]
4XEJX-ray3.80AL34/BL341-48[»]
4Y4OX-ray2.3017/271-49[»]
4Y4PX-ray2.5017/271-49[»]
4YPBX-ray3.40R7/Y71-49[»]
4YZVX-ray3.10R7/Y71-49[»]
4Z3SX-ray2.6517/271-49[»]
4Z8CX-ray2.9017/271-49[»]
4ZERX-ray3.1017/271-48[»]
4ZSNX-ray3.60R7/Y71-49[»]
5A9Zelectron microscopy4.70Ad1-49[»]
5AA0electron microscopy5.00Ad1-49[»]
5CZPX-ray3.30R7/Y71-49[»]
5D8BX-ray3.63AA/WB1-49[»]
5DFEX-ray3.10R7/Y71-49[»]
5DOXX-ray3.1017/271-49[»]
5DOYX-ray2.6017/271-49[»]
5E7KX-ray3.20L5/P81-49[»]
5E81X-ray2.95L5/P81-49[»]
5EL4X-ray3.15L5/P81-49[»]
5EL5X-ray3.15L5/P81-49[»]
5EL6X-ray3.10L5/P81-49[»]
5EL7X-ray3.15L5/P81-49[»]
5F8KX-ray2.8017/271-48[»]
5FDUX-ray2.9017/271-48[»]
5FDVX-ray2.8017/271-48[»]
5HAUX-ray3.0015/251-49[»]
5HCPX-ray2.8917/271-49[»]
5HCQX-ray2.8017/271-49[»]
5HCRX-ray2.8017/271-49[»]
5HD1X-ray2.7017/271-49[»]
5IB7X-ray2.99L5/P81-49[»]
5IB8X-ray3.13L5/P81-49[»]
5IBBX-ray2.96L5/P81-49[»]
5IMQelectron microscopy3.80y1-49[»]
5IMRelectron microscopy-y1-49[»]
5J30X-ray3.20R7/Y71-49[»]
5J3CX-ray3.04R7/Y71-49[»]
5J4BX-ray2.6017/271-49[»]
5J4CX-ray2.8017/271-49[»]
5J4DX-ray3.10EA/JC1-49[»]
5J8BX-ray2.6071-49[»]
5NDKX-ray2.95L5/P81-49[»]
5OT7electron microscopy3.80c1-48[»]
5UQ7electron microscopy3.5071-48[»]
5UQ8electron microscopy3.2071-48[»]
5VP2X-ray2.8017/271-49[»]
5W4KX-ray2.7017/271-49[»]
5WISX-ray2.7017/271-49[»]
5WITX-ray2.6017/271-49[»]
6B4VX-ray3.40EA/IC1-49[»]
6C5LX-ray3.20B7/D71-49[»]
6CFJX-ray2.8017/271-49[»]
6CFKX-ray2.7017/271-49[»]
6CFLX-ray2.6017/271-49[»]
ProteinModelPortaliP80340
SMRiP80340
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80340

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41084CH Bacteria
COG0230 LUCA
HOGENOMiHOG000111572
KOiK02914

Family and domain databases

HAMAPiMF_00391 Ribosomal_L34, 1 hit
InterProiView protein in InterPro
IPR000271 Ribosomal_L34
IPR020939 Ribosomal_L34_CS
PANTHERiPTHR14503 PTHR14503, 1 hit
PfamiView protein in Pfam
PF00468 Ribosomal_L34, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD003101 Ribosomal_L34, 1 hit
TIGRFAMsiTIGR01030 rpmH_bact, 1 hit
PROSITEiView protein in PROSITE
PS00784 RIBOSOMAL_L34, 1 hit

Sequencei

Sequence statusi: Complete.

P80340-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR
Length:49
Mass (Da):6,109
Last modified:March 15, 2004 - v3
Checksum:iB399FA1B7185C750
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti13A → N AA sequence (Ref. 4) Curated1
Sequence conflicti15T → N AA sequence (Ref. 4) Curated1

Mass spectrometryi

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA Translation: AAO88976.1
AP008226 Genomic DNA Translation: BAD70269.1
RefSeqiWP_011227941.1, NC_006461.1
YP_143712.1, NC_006461.1

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269
GeneIDi3169919
KEGGittj:TTHA0446
PATRICifig|300852.9.peg.445

Similar proteinsi

Entry informationi

Entry nameiRL34_THET8
AccessioniPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: April 25, 2018
This is version 146 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome
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Main funding by: National Institutes of Health