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P80340 (RL34_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 104. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L34
Gene names
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length49 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Found on the solvent side of the large subunit. HAMAP-Rule MF_00391

Subunit structure

Part of the 50S ribosomal subunit.

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides. HAMAP-Rule MF_00391

Sequence similarities

Belongs to the ribosomal protein L34P family.

Mass spectrometry

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. Ref.5

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 494950S ribosomal protein L34 HAMAP-Rule MF_00391
PRO_0000187493

Experimental info

Sequence conflict131A → N AA sequence Ref.4
Sequence conflict151T → N AA sequence Ref.4
Sequence conflict471R → S Ref.2

Secondary structure

1 ....... 49
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P80340 [UniParc].

Last modified March 15, 2004. Version 3.
Checksum: B399FA1B7185C750

FASTA496,109
        10         20         30         40 
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR

« Hide

References

« Hide 'large scale' references
[1]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE.
[2]"An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains."
Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K.
Proc. Natl. Acad. Sci. U.S.A. 100:5724-5729(2003) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[3]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[4]Boysen R.I., Schroeder W., Erdmann V.A.
Submitted (FEB-1994) to UniProtKB
Cited for: PROTEIN SEQUENCE OF 1-22.
[5]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[6]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqYP_143712.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71Z1-49[»]
1VSPX-ray3.83Z1-49[»]
2HGJX-ray5.0061-49[»]
2HGQX-ray5.5061-49[»]
2HGUX-ray4.5161-49[»]
2J01X-ray2.8071-49[»]
2J03X-ray2.8071-49[»]
2V47X-ray3.8071-49[»]
2V49X-ray3.8071-49[»]
2WDIX-ray3.3071-49[»]
2WDJX-ray3.3071-49[»]
2WDLX-ray3.5071-49[»]
2WDNX-ray3.5071-49[»]
2WH2X-ray3.4571-49[»]
2WH4X-ray3.4571-49[»]
2WRJX-ray3.6071-49[»]
2WRLX-ray3.6071-49[»]
2WROX-ray3.6071-49[»]
2WRRX-ray3.6071-49[»]
2X9SX-ray3.1071-49[»]
2X9UX-ray3.1071-49[»]
2XG0X-ray3.2071-49[»]
2XG2X-ray3.2071-49[»]
2XQEX-ray3.1071-49[»]
2XTGelectron microscopy7.8071-49[»]
2XUXelectron microscopy7.6071-49[»]
2Y0VX-ray3.1071-49[»]
2Y0XX-ray3.1071-49[»]
2Y0ZX-ray3.1071-49[»]
2Y11X-ray3.1071-49[»]
2Y13X-ray3.1071-49[»]
2Y15X-ray3.1071-49[»]
2Y17X-ray3.1071-49[»]
2Y19X-ray3.1071-49[»]
3D5BX-ray3.2171-49[»]
3D5DX-ray3.2171-49[»]
3F1FX-ray3.0071-49[»]
3F1HX-ray3.0071-49[»]
3FINelectron microscopy6.4071-49[»]
3HUXX-ray3.1071-49[»]
3HUZX-ray3.1071-49[»]
3I8FX-ray3.1071-49[»]
3I8IX-ray3.1071-49[»]
3I9CX-ray3.5071-49[»]
3I9EX-ray3.5071-49[»]
3KIRX-ray3.3071-49[»]
3KITX-ray3.3071-49[»]
3KIWX-ray3.6071-49[»]
3KIYX-ray3.6071-49[»]
3KNIX-ray3.0071-49[»]
3KNKX-ray3.0071-49[»]
3KNMX-ray3.4571-49[»]
3KNOX-ray3.4571-49[»]
3MRZX-ray3.6241-48[»]
3MS1X-ray3.6241-48[»]
3OH5X-ray3.0071-49[»]
3OH7X-ray3.0071-49[»]
3OHJX-ray3.0071-49[»]
3OHKX-ray3.0071-49[»]
3OHZX-ray3.0071-49[»]
3OI1X-ray3.0071-49[»]
3OI3X-ray3.1071-49[»]
3OI5X-ray3.1071-49[»]
3PYOX-ray3.5041-48[»]
3PYRX-ray3.5041-48[»]
3PYTX-ray3.4041-48[»]
3PYVX-ray3.4041-48[»]
3TVEX-ray3.1071-49[»]
3TVHX-ray3.1071-49[»]
3UXQX-ray3.2071-49[»]
3UXRX-ray3.2071-49[»]
3UYEX-ray3.0071-49[»]
3UYGX-ray3.0071-49[»]
3UZ1X-ray3.3071-49[»]
3UZ2X-ray3.3071-49[»]
3UZ8X-ray3.0071-49[»]
3UZ9X-ray3.0071-49[»]
3UZFX-ray3.3071-49[»]
3UZHX-ray3.3071-49[»]
3UZKX-ray3.3071-49[»]
3UZNX-ray3.3071-49[»]
3V23X-ray3.0071-49[»]
3V25X-ray3.0071-49[»]
3V27X-ray3.1071-49[»]
3V29X-ray3.1071-49[»]
3V2DX-ray2.7071-49[»]
3V2FX-ray2.7071-49[»]
3ZVPX-ray3.8071-49[»]
4ABSX-ray3.1071-49[»]
4DHAX-ray3.2071-49[»]
4DHCX-ray3.2071-49[»]
4G5LX-ray3.3071-49[»]
4G5NX-ray3.3071-49[»]
4G5UX-ray3.1071-49[»]
4G5WX-ray3.1071-49[»]
ProteinModelPortalP80340.
SMRP80340. Positions 1-49.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA0446.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70269; BAD70269; BAD70269.
GeneID3169919.
KEGGttj:TTHA0446.
PATRIC23955861. VBITheThe93045_0445.

Phylogenomic databases

eggNOGCOG0230.
HOGENOMHOG000111572.
KOK02914.
ProtClustDBPRK00399.

Family and domain databases

HAMAPMF_00391. Ribosomal_L34.
InterProIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERPTHR14503. PTHR14503. 1 hit.
PfamPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR01030. rpmH_bact. 1 hit.
PROSITEPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

EvolutionaryTraceP80340.

Entry information

Entry nameRL34_THET8
AccessionPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: May 1, 2013
This is version 104 of the entry and version 3 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents