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P80340

- RL34_THET8

UniProt

P80340 - RL34_THET8

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Protein

50S ribosomal protein L34

Gene
rpmH, rpl34, TTHA0446
Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.UniRule annotation

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 494950S ribosomal protein L34UniRule annotationPRO_0000187493Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Structurei

Secondary structure

1
49
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 168
Helixi18 – 236
Helixi25 – 3713
Beta strandi39 – 435

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VSAX-ray3.71Z1-49[»]
1VSPX-ray3.83Z1-49[»]
2HGJX-ray5.0061-49[»]
2HGQX-ray5.5061-49[»]
2HGUX-ray4.5161-49[»]
2J01X-ray2.8071-49[»]
2J03X-ray2.8071-49[»]
2V47X-ray3.8071-49[»]
2V49X-ray3.8071-49[»]
2WDIX-ray3.3071-49[»]
2WDJX-ray3.3071-49[»]
2WDLX-ray3.5071-49[»]
2WDNX-ray3.5071-49[»]
2WH2X-ray3.4571-49[»]
2WH4X-ray3.4571-49[»]
2WRJX-ray3.6071-49[»]
2WRLX-ray3.6071-49[»]
2WROX-ray3.6071-49[»]
2WRRX-ray3.6071-49[»]
2X9SX-ray3.1071-49[»]
2X9UX-ray3.1071-49[»]
2XG0X-ray3.2071-49[»]
2XG2X-ray3.2071-49[»]
2XQEX-ray3.1071-49[»]
2XTGelectron microscopy7.8071-49[»]
2XUXelectron microscopy7.6071-49[»]
2Y0VX-ray3.1071-49[»]
2Y0XX-ray3.1071-49[»]
2Y0ZX-ray3.1071-49[»]
2Y11X-ray3.1071-49[»]
2Y13X-ray3.1071-49[»]
2Y15X-ray3.1071-49[»]
2Y17X-ray3.1071-49[»]
2Y19X-ray3.1071-49[»]
3D5BX-ray3.2171-49[»]
3D5DX-ray3.2171-49[»]
3F1FX-ray3.0071-49[»]
3F1HX-ray3.0071-49[»]
3FINelectron microscopy6.4071-49[»]
3HUXX-ray3.1071-49[»]
3HUZX-ray3.1071-49[»]
3I8FX-ray3.1071-49[»]
3I8IX-ray3.1071-49[»]
3I9CX-ray3.5071-49[»]
3I9EX-ray3.5071-49[»]
3KIRX-ray3.3071-49[»]
3KITX-ray3.3071-49[»]
3KIWX-ray3.6071-49[»]
3KIYX-ray3.6071-49[»]
3KNIX-ray3.0071-49[»]
3KNKX-ray3.0071-49[»]
3KNMX-ray3.4571-49[»]
3KNOX-ray3.4571-49[»]
3MRZX-ray3.6241-48[»]
3MS1X-ray3.6241-48[»]
3OH5X-ray3.0071-49[»]
3OH7X-ray3.0071-49[»]
3OHJX-ray3.0071-49[»]
3OHKX-ray3.0071-49[»]
3OHZX-ray3.0071-49[»]
3OI1X-ray3.0071-49[»]
3OI3X-ray3.1071-49[»]
3OI5X-ray3.1071-49[»]
3PYOX-ray3.5041-48[»]
3PYRX-ray3.5041-48[»]
3PYTX-ray3.4041-48[»]
3PYVX-ray3.4041-48[»]
3TVEX-ray3.1071-49[»]
3TVHX-ray3.1071-49[»]
3UXQX-ray3.2071-49[»]
3UXRX-ray3.2071-49[»]
3UYEX-ray3.0071-49[»]
3UYGX-ray3.0071-49[»]
3UZ1X-ray3.3071-49[»]
3UZ2X-ray3.3071-49[»]
3UZ8X-ray3.0071-49[»]
3UZ9X-ray3.0071-49[»]
3UZFX-ray3.3071-49[»]
3UZHX-ray3.3071-49[»]
3UZKX-ray3.3071-49[»]
3UZNX-ray3.3071-49[»]
3V23X-ray3.0071-49[»]
3V25X-ray3.0071-49[»]
3V27X-ray3.1071-49[»]
3V29X-ray3.1071-49[»]
3V2DX-ray2.7071-49[»]
3V2FX-ray2.7071-49[»]
3V6WX-ray3.9071-49[»]
3V6XX-ray3.9071-49[»]
3ZN9X-ray3.1071-49[»]
3ZNEX-ray3.1071-49[»]
3ZVPX-ray3.8071-49[»]
4ABSX-ray3.1071-49[»]
4B8GX-ray3.7071-49[»]
4B8IX-ray3.7071-49[»]
4BTDX-ray2.9571-48[»]
4BYCX-ray3.3571-49[»]
4BYEX-ray3.3571-49[»]
4DHAX-ray3.2071-49[»]
4DHCX-ray3.2071-49[»]
4EJBX-ray3.5271-49[»]
4EJCX-ray3.5271-49[»]
4G5LX-ray3.3071-49[»]
4G5NX-ray3.3071-49[»]
4G5UX-ray3.1071-49[»]
4G5WX-ray3.1071-49[»]
4JUXX-ray2.8671-49[»]
4K0MX-ray3.3071-48[»]
4K0QX-ray3.3071-48[»]
4KBUX-ray3.8671-49[»]
4KBWX-ray3.8671-49[»]
4KCZX-ray3.5071-49[»]
4KD2X-ray3.5071-49[»]
4KD9X-ray3.5071-49[»]
4KDBX-ray3.5071-49[»]
4KDHX-ray4.0071-49[»]
4KDKX-ray4.0071-49[»]
4KFIX-ray3.4071-48[»]
4KFLX-ray3.4071-48[»]
4L6JX-ray3.4041-48[»]
4L6LX-ray3.4041-48[»]
4NVVX-ray3.0071-49[»]
4NVXX-ray3.0071-49[»]
4NVZX-ray3.1071-49[»]
4NW1X-ray3.1071-49[»]
ProteinModelPortaliP80340.
SMRiP80340. Positions 1-49.

Miscellaneous databases

EvolutionaryTraceiP80340.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0230.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P80340-1 [UniParc]FASTAAdd to Basket

« Hide

MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR    49
Length:49
Mass (Da):6,109
Last modified:March 15, 2004 - v3
Checksum:iB399FA1B7185C750
GO

Mass spectrometryi

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. 1 Publication

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131A → N AA sequence 1 Publication
Sequence conflicti15 – 151T → N AA sequence 1 Publication
Sequence conflicti47 – 471R → S1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiWP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1 .
AP008226 Genomic DNA. Translation: BAD70269.1 .
RefSeqi WP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VSA X-ray 3.71 Z 1-49 [» ]
1VSP X-ray 3.83 Z 1-49 [» ]
2HGJ X-ray 5.00 6 1-49 [» ]
2HGQ X-ray 5.50 6 1-49 [» ]
2HGU X-ray 4.51 6 1-49 [» ]
2J01 X-ray 2.80 7 1-49 [» ]
2J03 X-ray 2.80 7 1-49 [» ]
2V47 X-ray 3.80 7 1-49 [» ]
2V49 X-ray 3.80 7 1-49 [» ]
2WDI X-ray 3.30 7 1-49 [» ]
2WDJ X-ray 3.30 7 1-49 [» ]
2WDL X-ray 3.50 7 1-49 [» ]
2WDN X-ray 3.50 7 1-49 [» ]
2WH2 X-ray 3.45 7 1-49 [» ]
2WH4 X-ray 3.45 7 1-49 [» ]
2WRJ X-ray 3.60 7 1-49 [» ]
2WRL X-ray 3.60 7 1-49 [» ]
2WRO X-ray 3.60 7 1-49 [» ]
2WRR X-ray 3.60 7 1-49 [» ]
2X9S X-ray 3.10 7 1-49 [» ]
2X9U X-ray 3.10 7 1-49 [» ]
2XG0 X-ray 3.20 7 1-49 [» ]
2XG2 X-ray 3.20 7 1-49 [» ]
2XQE X-ray 3.10 7 1-49 [» ]
2XTG electron microscopy 7.80 7 1-49 [» ]
2XUX electron microscopy 7.60 7 1-49 [» ]
2Y0V X-ray 3.10 7 1-49 [» ]
2Y0X X-ray 3.10 7 1-49 [» ]
2Y0Z X-ray 3.10 7 1-49 [» ]
2Y11 X-ray 3.10 7 1-49 [» ]
2Y13 X-ray 3.10 7 1-49 [» ]
2Y15 X-ray 3.10 7 1-49 [» ]
2Y17 X-ray 3.10 7 1-49 [» ]
2Y19 X-ray 3.10 7 1-49 [» ]
3D5B X-ray 3.21 7 1-49 [» ]
3D5D X-ray 3.21 7 1-49 [» ]
3F1F X-ray 3.00 7 1-49 [» ]
3F1H X-ray 3.00 7 1-49 [» ]
3FIN electron microscopy 6.40 7 1-49 [» ]
3HUX X-ray 3.10 7 1-49 [» ]
3HUZ X-ray 3.10 7 1-49 [» ]
3I8F X-ray 3.10 7 1-49 [» ]
3I8I X-ray 3.10 7 1-49 [» ]
3I9C X-ray 3.50 7 1-49 [» ]
3I9E X-ray 3.50 7 1-49 [» ]
3KIR X-ray 3.30 7 1-49 [» ]
3KIT X-ray 3.30 7 1-49 [» ]
3KIW X-ray 3.60 7 1-49 [» ]
3KIY X-ray 3.60 7 1-49 [» ]
3KNI X-ray 3.00 7 1-49 [» ]
3KNK X-ray 3.00 7 1-49 [» ]
3KNM X-ray 3.45 7 1-49 [» ]
3KNO X-ray 3.45 7 1-49 [» ]
3MRZ X-ray 3.62 4 1-48 [» ]
3MS1 X-ray 3.62 4 1-48 [» ]
3OH5 X-ray 3.00 7 1-49 [» ]
3OH7 X-ray 3.00 7 1-49 [» ]
3OHJ X-ray 3.00 7 1-49 [» ]
3OHK X-ray 3.00 7 1-49 [» ]
3OHZ X-ray 3.00 7 1-49 [» ]
3OI1 X-ray 3.00 7 1-49 [» ]
3OI3 X-ray 3.10 7 1-49 [» ]
3OI5 X-ray 3.10 7 1-49 [» ]
3PYO X-ray 3.50 4 1-48 [» ]
3PYR X-ray 3.50 4 1-48 [» ]
3PYT X-ray 3.40 4 1-48 [» ]
3PYV X-ray 3.40 4 1-48 [» ]
3TVE X-ray 3.10 7 1-49 [» ]
3TVH X-ray 3.10 7 1-49 [» ]
3UXQ X-ray 3.20 7 1-49 [» ]
3UXR X-ray 3.20 7 1-49 [» ]
3UYE X-ray 3.00 7 1-49 [» ]
3UYG X-ray 3.00 7 1-49 [» ]
3UZ1 X-ray 3.30 7 1-49 [» ]
3UZ2 X-ray 3.30 7 1-49 [» ]
3UZ8 X-ray 3.00 7 1-49 [» ]
3UZ9 X-ray 3.00 7 1-49 [» ]
3UZF X-ray 3.30 7 1-49 [» ]
3UZH X-ray 3.30 7 1-49 [» ]
3UZK X-ray 3.30 7 1-49 [» ]
3UZN X-ray 3.30 7 1-49 [» ]
3V23 X-ray 3.00 7 1-49 [» ]
3V25 X-ray 3.00 7 1-49 [» ]
3V27 X-ray 3.10 7 1-49 [» ]
3V29 X-ray 3.10 7 1-49 [» ]
3V2D X-ray 2.70 7 1-49 [» ]
3V2F X-ray 2.70 7 1-49 [» ]
3V6W X-ray 3.90 7 1-49 [» ]
3V6X X-ray 3.90 7 1-49 [» ]
3ZN9 X-ray 3.10 7 1-49 [» ]
3ZNE X-ray 3.10 7 1-49 [» ]
3ZVP X-ray 3.80 7 1-49 [» ]
4ABS X-ray 3.10 7 1-49 [» ]
4B8G X-ray 3.70 7 1-49 [» ]
4B8I X-ray 3.70 7 1-49 [» ]
4BTD X-ray 2.95 7 1-48 [» ]
4BYC X-ray 3.35 7 1-49 [» ]
4BYE X-ray 3.35 7 1-49 [» ]
4DHA X-ray 3.20 7 1-49 [» ]
4DHC X-ray 3.20 7 1-49 [» ]
4EJB X-ray 3.52 7 1-49 [» ]
4EJC X-ray 3.52 7 1-49 [» ]
4G5L X-ray 3.30 7 1-49 [» ]
4G5N X-ray 3.30 7 1-49 [» ]
4G5U X-ray 3.10 7 1-49 [» ]
4G5W X-ray 3.10 7 1-49 [» ]
4JUX X-ray 2.86 7 1-49 [» ]
4K0M X-ray 3.30 7 1-48 [» ]
4K0Q X-ray 3.30 7 1-48 [» ]
4KBU X-ray 3.86 7 1-49 [» ]
4KBW X-ray 3.86 7 1-49 [» ]
4KCZ X-ray 3.50 7 1-49 [» ]
4KD2 X-ray 3.50 7 1-49 [» ]
4KD9 X-ray 3.50 7 1-49 [» ]
4KDB X-ray 3.50 7 1-49 [» ]
4KDH X-ray 4.00 7 1-49 [» ]
4KDK X-ray 4.00 7 1-49 [» ]
4KFI X-ray 3.40 7 1-48 [» ]
4KFL X-ray 3.40 7 1-48 [» ]
4L6J X-ray 3.40 4 1-48 [» ]
4L6L X-ray 3.40 4 1-48 [» ]
4NVV X-ray 3.00 7 1-49 [» ]
4NVX X-ray 3.00 7 1-49 [» ]
4NVZ X-ray 3.10 7 1-49 [» ]
4NW1 X-ray 3.10 7 1-49 [» ]
ProteinModelPortali P80340.
SMRi P80340. Positions 1-49.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0446.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70269 ; BAD70269 ; BAD70269 .
GeneIDi 3169919.
KEGGi ttj:TTHA0446.
PATRICi 23955861. VBITheThe93045_0445.

Phylogenomic databases

eggNOGi COG0230.
HOGENOMi HOG000111572.
KOi K02914.
OrthoDBi EOG6DZF71.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-467-MONOMER.

Miscellaneous databases

EvolutionaryTracei P80340.

Family and domain databases

HAMAPi MF_00391. Ribosomal_L34.
InterProi IPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view ]
PANTHERi PTHR14503. PTHR14503. 1 hit.
Pfami PF00468. Ribosomal_L34. 1 hit.
[Graphical view ]
ProDomi PD003101. Ribosomal_L34. 1 hit.
[Graphical view ] [Entries sharing at least one domain ]
TIGRFAMsi TIGR01030. rpmH_bact. 1 hit.
PROSITEi PS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE.
  2. "An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains."
    Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K.
    Proc. Natl. Acad. Sci. U.S.A. 100:5724-5729(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. Boysen R.I., Schroeder W., Erdmann V.A.
    Submitted (FEB-1994) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 1-22.
  5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  6. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL34_THET8
AccessioniPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: September 3, 2014
This is version 112 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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