Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 494950S ribosomal protein L34PRO_0000187493Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Structurei

Secondary structure

1
49
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 168Combined sources
Helixi18 – 225Combined sources
Helixi25 – 3713Combined sources
Beta strandi39 – 435Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2271-49[»]
1VVOX-ray3.2271-49[»]
1VVQX-ray3.9071-49[»]
1VVSX-ray3.9071-49[»]
1VVUX-ray3.9071-49[»]
1VVWX-ray3.9071-49[»]
1VVYX-ray3.9271-49[»]
1VW0X-ray3.9271-49[»]
1VX9X-ray2.9471-49[»]
1VXJX-ray2.9471-49[»]
1VXLX-ray3.4871-49[»]
1VXNX-ray3.4871-49[»]
1VXQX-ray3.1471-49[»]
1VXTX-ray3.1471-49[»]
1VY1X-ray3.6871-49[»]
1VY3X-ray3.6871-49[»]
2HGJX-ray5.0061-49[»]
2HGQX-ray5.5061-49[»]
2HGUX-ray4.5161-49[»]
2V47X-ray3.8071-49[»]
2V49X-ray3.8071-49[»]
2WDIX-ray3.3071-49[»]
2WDJX-ray3.3071-49[»]
2WDLX-ray3.5071-49[»]
2WDNX-ray3.5071-49[»]
2WH2X-ray3.4571-49[»]
2WH4X-ray3.4571-49[»]
2WRJX-ray3.6071-49[»]
2WRLX-ray3.6071-49[»]
2WROX-ray3.6071-49[»]
2WRRX-ray3.6071-49[»]
2X9SX-ray3.1071-49[»]
2X9UX-ray3.1071-49[»]
2XG0X-ray3.2071-49[»]
2XG2X-ray3.2071-49[»]
2XQEX-ray3.1071-49[»]
2XTGelectron microscopy7.8071-49[»]
2XUXelectron microscopy7.6071-49[»]
2Y0VX-ray3.1071-49[»]
2Y0XX-ray3.1071-49[»]
2Y0ZX-ray3.1071-49[»]
2Y11X-ray3.1071-49[»]
2Y13X-ray3.1071-49[»]
2Y15X-ray3.1071-49[»]
2Y17X-ray3.1071-49[»]
2Y19X-ray3.1071-49[»]
3FINelectron microscopy6.4071-49[»]
3HUXX-ray3.1071-49[»]
3HUZX-ray3.1071-49[»]
3I8FX-ray3.1071-49[»]
3I9CX-ray3.5071-49[»]
3I9EX-ray3.5071-49[»]
3KIWX-ray3.6071-49[»]
3KNIX-ray3.0071-49[»]
3KNKX-ray3.0071-49[»]
3KNMX-ray3.4571-49[»]
3KNOX-ray3.4571-49[»]
3OH5X-ray3.0071-49[»]
3OH7X-ray3.0071-49[»]
3OHJX-ray3.0071-49[»]
3OHKX-ray3.0071-49[»]
3OHZX-ray3.0071-49[»]
3OI1X-ray3.0071-49[»]
3OI3X-ray3.1071-49[»]
3OI5X-ray3.1071-49[»]
3TVEX-ray3.1071-49[»]
3TVHX-ray3.1071-49[»]
3UXQX-ray3.2071-49[»]
3UXRX-ray3.2071-49[»]
3UYEX-ray3.0071-49[»]
3UYGX-ray3.0071-49[»]
3UZ1X-ray3.3071-49[»]
3UZ2X-ray3.3071-49[»]
3UZ8X-ray3.0071-49[»]
3UZ9X-ray3.0071-49[»]
3UZFX-ray3.3071-49[»]
3UZHX-ray3.3071-49[»]
3UZKX-ray3.3071-49[»]
3UZNX-ray3.3071-49[»]
3V23X-ray3.0071-49[»]
3V25X-ray3.0071-49[»]
3V27X-ray3.1071-49[»]
3V29X-ray3.1071-49[»]
3V2DX-ray2.7071-49[»]
3V2FX-ray2.7071-49[»]
3V6WX-ray3.9071-49[»]
3V6XX-ray3.9071-49[»]
3ZN9X-ray3.1071-49[»]
3ZNEX-ray3.1071-49[»]
3ZVPX-ray3.8071-49[»]
4ABSX-ray3.1071-49[»]
4B8GX-ray3.7071-49[»]
4B8IX-ray3.7071-49[»]
4BTDX-ray2.9571-48[»]
4BYCX-ray3.3571-49[»]
4BYEX-ray3.3571-49[»]
4DHAX-ray3.2071-49[»]
4DHCX-ray3.2071-49[»]
4EJBX-ray3.5271-49[»]
4EJCX-ray3.5271-49[»]
4G5LX-ray3.3071-49[»]
4G5NX-ray3.3071-49[»]
4G5UX-ray3.1071-49[»]
4G5WX-ray3.1071-49[»]
4JUXX-ray2.8671-49[»]
4K0MX-ray3.3071-48[»]
4K0QX-ray3.3071-48[»]
4KDKX-ray4.0071-49[»]
4KX0X-ray3.4471-49[»]
4KX2X-ray3.4471-49[»]
4L6JX-ray3.4041-48[»]
4L6LX-ray3.4041-48[»]
4NVVX-ray3.0071-49[»]
4NVXX-ray3.0071-49[»]
4NVZX-ray3.1071-49[»]
4NW1X-ray3.1071-49[»]
4QCNX-ray2.6071-49[»]
4QCPX-ray2.6071-49[»]
4QCRX-ray2.5571-49[»]
4QCTX-ray2.5571-49[»]
4QCVX-ray2.9071-49[»]
4QCXX-ray2.9071-49[»]
4QCZX-ray2.8071-49[»]
4QD1X-ray2.8071-49[»]
4QJSX-ray2.9071-49[»]
4RB6X-ray2.4071-49[»]
4RB8X-ray2.4071-49[»]
4RBAX-ray2.5571-49[»]
4RBCX-ray2.5571-49[»]
4RBEX-ray2.7071-49[»]
4RBIX-ray2.7071-49[»]
4RBKX-ray2.7071-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V51X-ray2.8071-49[»]
4V63X-ray3.2171-49[»]
4V67X-ray3.0071-49[»]
4V6FX-ray3.1071-49[»]
4V7JX-ray3.3071-49[»]
4V7KX-ray3.6071-49[»]
4V7PX-ray3.6241-48[»]
4V83X-ray3.5041-48[»]
4V84X-ray3.4041-48[»]
4V9JX-ray3.8671-49[»]
4V9KX-ray3.5071-49[»]
4V9LX-ray3.5071-49[»]
4V9MX-ray4.0071-49[»]
4V9NX-ray3.4071-48[»]
4W29X-ray3.8071-49[»]
4W2BX-ray3.60c1-49[»]
4W2DX-ray3.60c1-49[»]
ProteinModelPortaliP80340.
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80340.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.Curated

Phylogenomic databases

eggNOGiCOG0230.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P80340-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40 
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR
Length:49
Mass (Da):6,109
Last modified:March 15, 2004 - v3
Checksum:iB399FA1B7185C750
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131A → N AA sequence 1 PublicationCurated
Sequence conflicti15 – 151T → N AA sequence 1 PublicationCurated
Sequence conflicti47 – 471R → S(PubMed:12719542)Curated

Mass spectrometryi

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiWP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiWP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2271-49[»]
1VVOX-ray3.2271-49[»]
1VVQX-ray3.9071-49[»]
1VVSX-ray3.9071-49[»]
1VVUX-ray3.9071-49[»]
1VVWX-ray3.9071-49[»]
1VVYX-ray3.9271-49[»]
1VW0X-ray3.9271-49[»]
1VX9X-ray2.9471-49[»]
1VXJX-ray2.9471-49[»]
1VXLX-ray3.4871-49[»]
1VXNX-ray3.4871-49[»]
1VXQX-ray3.1471-49[»]
1VXTX-ray3.1471-49[»]
1VY1X-ray3.6871-49[»]
1VY3X-ray3.6871-49[»]
2HGJX-ray5.0061-49[»]
2HGQX-ray5.5061-49[»]
2HGUX-ray4.5161-49[»]
2V47X-ray3.8071-49[»]
2V49X-ray3.8071-49[»]
2WDIX-ray3.3071-49[»]
2WDJX-ray3.3071-49[»]
2WDLX-ray3.5071-49[»]
2WDNX-ray3.5071-49[»]
2WH2X-ray3.4571-49[»]
2WH4X-ray3.4571-49[»]
2WRJX-ray3.6071-49[»]
2WRLX-ray3.6071-49[»]
2WROX-ray3.6071-49[»]
2WRRX-ray3.6071-49[»]
2X9SX-ray3.1071-49[»]
2X9UX-ray3.1071-49[»]
2XG0X-ray3.2071-49[»]
2XG2X-ray3.2071-49[»]
2XQEX-ray3.1071-49[»]
2XTGelectron microscopy7.8071-49[»]
2XUXelectron microscopy7.6071-49[»]
2Y0VX-ray3.1071-49[»]
2Y0XX-ray3.1071-49[»]
2Y0ZX-ray3.1071-49[»]
2Y11X-ray3.1071-49[»]
2Y13X-ray3.1071-49[»]
2Y15X-ray3.1071-49[»]
2Y17X-ray3.1071-49[»]
2Y19X-ray3.1071-49[»]
3FINelectron microscopy6.4071-49[»]
3HUXX-ray3.1071-49[»]
3HUZX-ray3.1071-49[»]
3I8FX-ray3.1071-49[»]
3I9CX-ray3.5071-49[»]
3I9EX-ray3.5071-49[»]
3KIWX-ray3.6071-49[»]
3KNIX-ray3.0071-49[»]
3KNKX-ray3.0071-49[»]
3KNMX-ray3.4571-49[»]
3KNOX-ray3.4571-49[»]
3OH5X-ray3.0071-49[»]
3OH7X-ray3.0071-49[»]
3OHJX-ray3.0071-49[»]
3OHKX-ray3.0071-49[»]
3OHZX-ray3.0071-49[»]
3OI1X-ray3.0071-49[»]
3OI3X-ray3.1071-49[»]
3OI5X-ray3.1071-49[»]
3TVEX-ray3.1071-49[»]
3TVHX-ray3.1071-49[»]
3UXQX-ray3.2071-49[»]
3UXRX-ray3.2071-49[»]
3UYEX-ray3.0071-49[»]
3UYGX-ray3.0071-49[»]
3UZ1X-ray3.3071-49[»]
3UZ2X-ray3.3071-49[»]
3UZ8X-ray3.0071-49[»]
3UZ9X-ray3.0071-49[»]
3UZFX-ray3.3071-49[»]
3UZHX-ray3.3071-49[»]
3UZKX-ray3.3071-49[»]
3UZNX-ray3.3071-49[»]
3V23X-ray3.0071-49[»]
3V25X-ray3.0071-49[»]
3V27X-ray3.1071-49[»]
3V29X-ray3.1071-49[»]
3V2DX-ray2.7071-49[»]
3V2FX-ray2.7071-49[»]
3V6WX-ray3.9071-49[»]
3V6XX-ray3.9071-49[»]
3ZN9X-ray3.1071-49[»]
3ZNEX-ray3.1071-49[»]
3ZVPX-ray3.8071-49[»]
4ABSX-ray3.1071-49[»]
4B8GX-ray3.7071-49[»]
4B8IX-ray3.7071-49[»]
4BTDX-ray2.9571-48[»]
4BYCX-ray3.3571-49[»]
4BYEX-ray3.3571-49[»]
4DHAX-ray3.2071-49[»]
4DHCX-ray3.2071-49[»]
4EJBX-ray3.5271-49[»]
4EJCX-ray3.5271-49[»]
4G5LX-ray3.3071-49[»]
4G5NX-ray3.3071-49[»]
4G5UX-ray3.1071-49[»]
4G5WX-ray3.1071-49[»]
4JUXX-ray2.8671-49[»]
4K0MX-ray3.3071-48[»]
4K0QX-ray3.3071-48[»]
4KDKX-ray4.0071-49[»]
4KX0X-ray3.4471-49[»]
4KX2X-ray3.4471-49[»]
4L6JX-ray3.4041-48[»]
4L6LX-ray3.4041-48[»]
4NVVX-ray3.0071-49[»]
4NVXX-ray3.0071-49[»]
4NVZX-ray3.1071-49[»]
4NW1X-ray3.1071-49[»]
4QCNX-ray2.6071-49[»]
4QCPX-ray2.6071-49[»]
4QCRX-ray2.5571-49[»]
4QCTX-ray2.5571-49[»]
4QCVX-ray2.9071-49[»]
4QCXX-ray2.9071-49[»]
4QCZX-ray2.8071-49[»]
4QD1X-ray2.8071-49[»]
4QJSX-ray2.9071-49[»]
4RB6X-ray2.4071-49[»]
4RB8X-ray2.4071-49[»]
4RBAX-ray2.5571-49[»]
4RBCX-ray2.5571-49[»]
4RBEX-ray2.7071-49[»]
4RBIX-ray2.7071-49[»]
4RBKX-ray2.7071-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V51X-ray2.8071-49[»]
4V63X-ray3.2171-49[»]
4V67X-ray3.0071-49[»]
4V6FX-ray3.1071-49[»]
4V7JX-ray3.3071-49[»]
4V7KX-ray3.6071-49[»]
4V7PX-ray3.6241-48[»]
4V83X-ray3.5041-48[»]
4V84X-ray3.4041-48[»]
4V9JX-ray3.8671-49[»]
4V9KX-ray3.5071-49[»]
4V9LX-ray3.5071-49[»]
4V9MX-ray4.0071-49[»]
4V9NX-ray3.4071-48[»]
4W29X-ray3.8071-49[»]
4W2BX-ray3.60c1-49[»]
4W2DX-ray3.60c1-49[»]
ProteinModelPortaliP80340.
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Phylogenomic databases

eggNOGiCOG0230.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP80340.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE.
  2. "An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains."
    Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K.
    Proc. Natl. Acad. Sci. U.S.A. 100:5724-5729(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. Boysen R.I., Schroeder W., Erdmann V.A.
    Submitted (FEB-1994) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 1-22.
  5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  6. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL34_THET8
AccessioniPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: February 4, 2015
This is version 117 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.