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Protein

50S ribosomal protein L34

Gene

rpmH

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.
BRENDAi1.4.3.3. 5424.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L34
Gene namesi
Name:rpmH
Synonyms:rpl34
Ordered Locus Names:TTHA0446
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 494950S ribosomal protein L34PRO_0000187493Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Structurei

Secondary structure

1
49
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi9 – 168Combined sources
Helixi18 – 236Combined sources
Helixi25 – 3713Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R7/Y71-49[»]
1VY4X-ray2.60B7/D71-49[»]
1VY5X-ray2.55B7/D71-49[»]
1VY6X-ray2.90B7/D71-49[»]
1VY7X-ray2.80B7/D71-49[»]
4L47X-ray3.22R7/Y71-49[»]
4L71X-ray3.90R7/Y71-49[»]
4LELX-ray3.90R7/Y71-49[»]
4LFZX-ray3.92R7/Y71-49[»]
4LNTX-ray2.94R7/Y71-49[»]
4LSKX-ray3.48R7/Y71-49[»]
4LT8X-ray3.14R7/Y71-49[»]
4P6FX-ray3.60R7/Y71-49[»]
4P70X-ray3.68R7/Y71-49[»]
4TUAX-ray3.60R7/Y71-49[»]
4TUBX-ray3.60R7/Y71-49[»]
4TUCX-ray3.60R7/Y71-49[»]
4TUDX-ray3.60R7/Y71-49[»]
4TUEX-ray3.50R7/Y71-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V4XX-ray5.00B61-49[»]
4V4YX-ray5.50B61-49[»]
4V4ZX-ray4.51B61-49[»]
4V51X-ray2.80B7/D71-49[»]
4V5AX-ray3.50B7/D71-49[»]
4V5CX-ray3.30B7/D71-49[»]
4V5DX-ray3.50B7/D71-49[»]
4V5EX-ray3.45B7/D71-49[»]
4V5FX-ray3.60B7/D71-49[»]
4V5GX-ray3.60B7/D71-49[»]
4V5JX-ray3.10B7/D71-49[»]
4V5KX-ray3.20B7/D71-49[»]
4V5LX-ray3.10B71-49[»]
4V5Melectron microscopy7.80B71-49[»]
4V5Nelectron microscopy7.60B71-49[»]
4V5PX-ray3.10B7/D71-49[»]
4V5QX-ray3.10B7/D71-49[»]
4V5RX-ray3.10B7/D71-49[»]
4V5SX-ray3.10B7/D71-49[»]
4V63X-ray3.21B7/D71-49[»]
4V67X-ray3.00B7/D71-49[»]
4V68electron microscopy6.40B71-49[»]
4V6AX-ray3.10B7/D71-49[»]
4V6FX-ray3.10A7/D71-49[»]
4V6GX-ray3.50B7/D71-49[»]
4V7JX-ray3.30A7/B71-49[»]
4V7KX-ray3.60A7/B71-49[»]
4V7LX-ray3.00B7/D71-49[»]
4V7MX-ray3.45B7/D71-49[»]
4V7PX-ray3.62B4/C41-48[»]
4V7WX-ray3.00B7/D71-49[»]
4V7XX-ray3.00B7/D71-49[»]
4V7YX-ray3.00B7/D71-49[»]
4V7ZX-ray3.10B7/D71-49[»]
4V83X-ray3.50B4/D41-48[»]
4V84X-ray3.40B4/D41-48[»]
4V87X-ray3.10A7/D71-49[»]
4V8AX-ray3.20A7/B71-49[»]
4V8BX-ray3.00B7/D71-49[»]
4V8CX-ray3.30A7/B71-49[»]
4V8DX-ray3.00B7/D71-49[»]
4V8EX-ray3.30A7/C71-49[»]
4V8FX-ray3.30A7/D71-49[»]
4V8GX-ray3.00B7/D71-49[»]
4V8HX-ray3.10B7/D71-49[»]
4V8IX-ray2.70B7/D71-49[»]
4V8JX-ray3.90B7/D71-49[»]
4V8NX-ray3.10B7/D71-49[»]
4V8OX-ray3.80B71-49[»]
4V8QX-ray3.10A71-49[»]
4V8UX-ray3.70B7/D71-49[»]
4V8XX-ray3.35B7/D71-49[»]
4V90X-ray2.95B71-48[»]
4V95X-ray3.20B7/D71-49[»]
4V97X-ray3.52B7/D71-49[»]
4V9AX-ray3.30B7/D71-49[»]
4V9BX-ray3.10B7/D71-49[»]
4V9HX-ray2.86B71-49[»]
4V9IX-ray3.30B7/D71-48[»]
4V9JX-ray3.86B7/D71-49[»]
4V9KX-ray3.50B7/D71-49[»]
4V9LX-ray3.50B7/D71-49[»]
4V9MX-ray4.00B7/D71-49[»]
4V9NX-ray3.40B7/D71-48[»]
4V9QX-ray3.40A4/C41-48[»]
4V9RX-ray3.00B7/D71-49[»]
4V9SX-ray3.10B7/D71-49[»]
4W29X-ray3.80B7/D71-49[»]
4W2EX-ray2.9071-49[»]
4W2FX-ray2.40B7/D71-49[»]
4W2GX-ray2.55B7/D71-49[»]
4W2HX-ray2.70B7/D71-49[»]
4W2IX-ray2.70B7/D71-49[»]
4W4GX-ray3.30R7/Y71-49[»]
4WPOX-ray2.80A7/C71-49[»]
4WQ1X-ray3.10L5/P81-49[»]
4WQFX-ray2.80A7/C71-49[»]
4WQRX-ray3.15L5/P81-49[»]
4WQUX-ray2.80A7/C71-49[»]
4WQYX-ray2.80A7/C71-49[»]
4WR6X-ray3.05L5/P81-49[»]
4WRAX-ray3.05L5/P81-49[»]
4WROX-ray3.05P81-49[»]
4WSDX-ray2.95L5/P81-49[»]
4WSMX-ray3.30L5/P81-49[»]
4WT1X-ray3.05L5/P81-49[»]
4WT8X-ray3.40C8/D81-48[»]
4WU1X-ray3.20L5/P81-49[»]
4WZDX-ray3.10L5/P81-49[»]
4WZOX-ray3.30L5/P81-49[»]
4XEJX-ray3.80AL34/BL341-48[»]
4Y4OX-ray2.3017/271-49[»]
4Y4PX-ray2.5017/271-49[»]
4YPBX-ray3.40R7/Y71-49[»]
4YZVX-ray3.10R7/Y71-49[»]
4Z3SX-ray2.6517/271-49[»]
4Z8CX-ray2.9017/271-49[»]
4ZERX-ray3.1017/271-48[»]
5A9Zelectron microscopy4.70Ad1-49[»]
5AA0electron microscopy5.00Ad1-49[»]
5D8BX-ray3.63AA/WB1-49[»]
5DOXX-ray3.1017/271-49[»]
5DOYX-ray2.6017/271-49[»]
5E7KX-ray3.20L5/P81-49[»]
5E81X-ray2.95L5/P81-49[»]
5EL4X-ray3.15L5/P81-49[»]
5EL5X-ray3.15L5/P81-49[»]
5EL6X-ray3.10L5/P81-49[»]
5EL7X-ray3.15L5/P81-49[»]
5F8KX-ray2.8017/271-48[»]
5FDUX-ray2.9017/271-48[»]
5FDVX-ray2.8017/271-48[»]
5HAUX-ray3.0015/251-49[»]
5HCPX-ray2.8917/271-49[»]
5HCQX-ray2.8017/271-49[»]
5HCRX-ray2.8017/271-49[»]
5HD1X-ray2.7017/271-49[»]
5IB7X-ray2.99L5/P81-49[»]
5IB8X-ray3.13L5/P81-49[»]
5IBBX-ray2.96L5/P81-49[»]
5IMQelectron microscopy3.80y1-49[»]
5IMRelectron microscopy-y1-49[»]
5J4BX-ray2.6017/271-49[»]
5J4CX-ray2.8017/271-49[»]
5J8BX-ray2.6071-49[»]
ProteinModelPortaliP80340.
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80340.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L34P family.Curated

Phylogenomic databases

eggNOGiENOG41084CH. Bacteria.
COG0230. LUCA.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P80340-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40 
MKRTWQPNRR KRAKTHGFRA RMRTPGGRKV LKRRRQKGRW RLTPAVRKR
Length:49
Mass (Da):6,109
Last modified:March 15, 2004 - v3
Checksum:iB399FA1B7185C750
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti13 – 131A → N AA sequence (Ref. 4) Curated
Sequence conflicti15 – 151T → N AA sequence (Ref. 4) Curated
Sequence conflicti47 – 471R → S (PubMed:12719542).Curated

Mass spectrometryi

Molecular mass is 6110 Da from positions 1 - 49. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiWP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY256342 Genomic DNA. Translation: AAO88976.1.
AP008226 Genomic DNA. Translation: BAD70269.1.
RefSeqiWP_011227941.1. NC_006461.1.
YP_143712.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R7/Y71-49[»]
1VY4X-ray2.60B7/D71-49[»]
1VY5X-ray2.55B7/D71-49[»]
1VY6X-ray2.90B7/D71-49[»]
1VY7X-ray2.80B7/D71-49[»]
4L47X-ray3.22R7/Y71-49[»]
4L71X-ray3.90R7/Y71-49[»]
4LELX-ray3.90R7/Y71-49[»]
4LFZX-ray3.92R7/Y71-49[»]
4LNTX-ray2.94R7/Y71-49[»]
4LSKX-ray3.48R7/Y71-49[»]
4LT8X-ray3.14R7/Y71-49[»]
4P6FX-ray3.60R7/Y71-49[»]
4P70X-ray3.68R7/Y71-49[»]
4TUAX-ray3.60R7/Y71-49[»]
4TUBX-ray3.60R7/Y71-49[»]
4TUCX-ray3.60R7/Y71-49[»]
4TUDX-ray3.60R7/Y71-49[»]
4TUEX-ray3.50R7/Y71-49[»]
4V4IX-ray3.71Z1-49[»]
4V4JX-ray3.83Z1-49[»]
4V4XX-ray5.00B61-49[»]
4V4YX-ray5.50B61-49[»]
4V4ZX-ray4.51B61-49[»]
4V51X-ray2.80B7/D71-49[»]
4V5AX-ray3.50B7/D71-49[»]
4V5CX-ray3.30B7/D71-49[»]
4V5DX-ray3.50B7/D71-49[»]
4V5EX-ray3.45B7/D71-49[»]
4V5FX-ray3.60B7/D71-49[»]
4V5GX-ray3.60B7/D71-49[»]
4V5JX-ray3.10B7/D71-49[»]
4V5KX-ray3.20B7/D71-49[»]
4V5LX-ray3.10B71-49[»]
4V5Melectron microscopy7.80B71-49[»]
4V5Nelectron microscopy7.60B71-49[»]
4V5PX-ray3.10B7/D71-49[»]
4V5QX-ray3.10B7/D71-49[»]
4V5RX-ray3.10B7/D71-49[»]
4V5SX-ray3.10B7/D71-49[»]
4V63X-ray3.21B7/D71-49[»]
4V67X-ray3.00B7/D71-49[»]
4V68electron microscopy6.40B71-49[»]
4V6AX-ray3.10B7/D71-49[»]
4V6FX-ray3.10A7/D71-49[»]
4V6GX-ray3.50B7/D71-49[»]
4V7JX-ray3.30A7/B71-49[»]
4V7KX-ray3.60A7/B71-49[»]
4V7LX-ray3.00B7/D71-49[»]
4V7MX-ray3.45B7/D71-49[»]
4V7PX-ray3.62B4/C41-48[»]
4V7WX-ray3.00B7/D71-49[»]
4V7XX-ray3.00B7/D71-49[»]
4V7YX-ray3.00B7/D71-49[»]
4V7ZX-ray3.10B7/D71-49[»]
4V83X-ray3.50B4/D41-48[»]
4V84X-ray3.40B4/D41-48[»]
4V87X-ray3.10A7/D71-49[»]
4V8AX-ray3.20A7/B71-49[»]
4V8BX-ray3.00B7/D71-49[»]
4V8CX-ray3.30A7/B71-49[»]
4V8DX-ray3.00B7/D71-49[»]
4V8EX-ray3.30A7/C71-49[»]
4V8FX-ray3.30A7/D71-49[»]
4V8GX-ray3.00B7/D71-49[»]
4V8HX-ray3.10B7/D71-49[»]
4V8IX-ray2.70B7/D71-49[»]
4V8JX-ray3.90B7/D71-49[»]
4V8NX-ray3.10B7/D71-49[»]
4V8OX-ray3.80B71-49[»]
4V8QX-ray3.10A71-49[»]
4V8UX-ray3.70B7/D71-49[»]
4V8XX-ray3.35B7/D71-49[»]
4V90X-ray2.95B71-48[»]
4V95X-ray3.20B7/D71-49[»]
4V97X-ray3.52B7/D71-49[»]
4V9AX-ray3.30B7/D71-49[»]
4V9BX-ray3.10B7/D71-49[»]
4V9HX-ray2.86B71-49[»]
4V9IX-ray3.30B7/D71-48[»]
4V9JX-ray3.86B7/D71-49[»]
4V9KX-ray3.50B7/D71-49[»]
4V9LX-ray3.50B7/D71-49[»]
4V9MX-ray4.00B7/D71-49[»]
4V9NX-ray3.40B7/D71-48[»]
4V9QX-ray3.40A4/C41-48[»]
4V9RX-ray3.00B7/D71-49[»]
4V9SX-ray3.10B7/D71-49[»]
4W29X-ray3.80B7/D71-49[»]
4W2EX-ray2.9071-49[»]
4W2FX-ray2.40B7/D71-49[»]
4W2GX-ray2.55B7/D71-49[»]
4W2HX-ray2.70B7/D71-49[»]
4W2IX-ray2.70B7/D71-49[»]
4W4GX-ray3.30R7/Y71-49[»]
4WPOX-ray2.80A7/C71-49[»]
4WQ1X-ray3.10L5/P81-49[»]
4WQFX-ray2.80A7/C71-49[»]
4WQRX-ray3.15L5/P81-49[»]
4WQUX-ray2.80A7/C71-49[»]
4WQYX-ray2.80A7/C71-49[»]
4WR6X-ray3.05L5/P81-49[»]
4WRAX-ray3.05L5/P81-49[»]
4WROX-ray3.05P81-49[»]
4WSDX-ray2.95L5/P81-49[»]
4WSMX-ray3.30L5/P81-49[»]
4WT1X-ray3.05L5/P81-49[»]
4WT8X-ray3.40C8/D81-48[»]
4WU1X-ray3.20L5/P81-49[»]
4WZDX-ray3.10L5/P81-49[»]
4WZOX-ray3.30L5/P81-49[»]
4XEJX-ray3.80AL34/BL341-48[»]
4Y4OX-ray2.3017/271-49[»]
4Y4PX-ray2.5017/271-49[»]
4YPBX-ray3.40R7/Y71-49[»]
4YZVX-ray3.10R7/Y71-49[»]
4Z3SX-ray2.6517/271-49[»]
4Z8CX-ray2.9017/271-49[»]
4ZERX-ray3.1017/271-48[»]
5A9Zelectron microscopy4.70Ad1-49[»]
5AA0electron microscopy5.00Ad1-49[»]
5D8BX-ray3.63AA/WB1-49[»]
5DOXX-ray3.1017/271-49[»]
5DOYX-ray2.6017/271-49[»]
5E7KX-ray3.20L5/P81-49[»]
5E81X-ray2.95L5/P81-49[»]
5EL4X-ray3.15L5/P81-49[»]
5EL5X-ray3.15L5/P81-49[»]
5EL6X-ray3.10L5/P81-49[»]
5EL7X-ray3.15L5/P81-49[»]
5F8KX-ray2.8017/271-48[»]
5FDUX-ray2.9017/271-48[»]
5FDVX-ray2.8017/271-48[»]
5HAUX-ray3.0015/251-49[»]
5HCPX-ray2.8917/271-49[»]
5HCQX-ray2.8017/271-49[»]
5HCRX-ray2.8017/271-49[»]
5HD1X-ray2.7017/271-49[»]
5IB7X-ray2.99L5/P81-49[»]
5IB8X-ray3.13L5/P81-49[»]
5IBBX-ray2.96L5/P81-49[»]
5IMQelectron microscopy3.80y1-49[»]
5IMRelectron microscopy-y1-49[»]
5J4BX-ray2.6017/271-49[»]
5J4CX-ray2.8017/271-49[»]
5J8BX-ray2.6071-49[»]
ProteinModelPortaliP80340.
SMRiP80340. Positions 1-49.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi300852.TTHA0446.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD70269; BAD70269; BAD70269.
GeneIDi3169919.
KEGGittj:TTHA0446.
PATRICi23955861. VBITheThe93045_0445.

Phylogenomic databases

eggNOGiENOG41084CH. Bacteria.
COG0230. LUCA.
HOGENOMiHOG000111572.
KOiK02914.
OrthoDBiEOG6DZF71.

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-467-MONOMER.
BRENDAi1.4.3.3. 5424.

Miscellaneous databases

EvolutionaryTraceiP80340.

Family and domain databases

HAMAPiMF_00391. Ribosomal_L34.
InterProiIPR000271. Ribosomal_L34.
IPR020939. Ribosomal_L34_CS.
[Graphical view]
PANTHERiPTHR14503. PTHR14503. 1 hit.
PfamiPF00468. Ribosomal_L34. 1 hit.
[Graphical view]
ProDomiPD003101. Ribosomal_L34. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsiTIGR01030. rpmH_bact. 1 hit.
PROSITEiPS00784. RIBOSOMAL_L34. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE.
  2. "An unusual mechanism of bacterial gene expression revealed for the RNase P protein of Thermus strains."
    Feltens R., Gossringer M., Willkomm D.K., Urlaub H., Hartmann R.K.
    Proc. Natl. Acad. Sci. U.S.A. 100:5724-5729(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  3. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  4. Boysen R.I., Schroeder W., Erdmann V.A.
    Submitted (FEB-1994) to UniProtKB
    Cited for: PROTEIN SEQUENCE OF 1-22.
  5. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  6. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL34_THET8
AccessioniPrimary (citable) accession number: P80340
Secondary accession number(s): Q5SL47, Q7X5K7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: March 15, 2004
Last modified: July 6, 2016
This is version 133 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

The open reading frame (ORF) for this protein is entirely within the ORF for the RNase P protein (RnaP). The two start codons are separated by four nucleotides.

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.