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P80339

- RL32_THET8

UniProt

P80339 - RL32_THET8

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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

  1. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciTTHE300852:GH8R-439-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32
Gene namesi
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TTHA0418
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
ProteomesiUP000000532: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. large ribosomal subunit Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Initiator methioninei1 – 11Removed2 Publications
Chaini2 – 605950S ribosomal protein L32PRO_0000172427Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0418.

Structurei

Secondary structure

1
60
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi13 – 197
Helixi20 – 223
Beta strandi31 – 333
Turni34 – 363
Beta strandi38 – 403
Beta strandi42 – 454
Turni47 – 493
Beta strandi52 – 543
Beta strandi55 – 573

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1VVMX-ray3.2251-60[»]
1VVOX-ray3.2251-60[»]
1VVQX-ray3.9051-60[»]
1VVSX-ray3.9051-60[»]
1VVUX-ray3.9051-60[»]
1VVWX-ray3.9051-60[»]
1VVYX-ray3.9251-60[»]
1VW0X-ray3.9251-60[»]
1VX9X-ray2.9451-60[»]
1VXJX-ray2.9451-60[»]
1VXLX-ray3.4851-60[»]
1VXNX-ray3.4851-60[»]
1VXQX-ray3.1451-60[»]
1VXTX-ray3.1451-60[»]
1VY1X-ray3.6851-60[»]
1VY3X-ray3.6851-60[»]
1YL3X-ray5.5051-60[»]
2HGJX-ray5.0041-60[»]
2HGQX-ray5.5041-60[»]
2HGUX-ray4.5141-60[»]
2J01X-ray2.8052-60[»]
2J03X-ray2.8052-60[»]
2V47X-ray3.5052-60[»]
2V49X-ray3.5052-60[»]
2WDIX-ray3.3051-60[»]
2WDJX-ray3.3051-60[»]
2WDLX-ray3.5051-60[»]
2WDNX-ray3.5051-60[»]
2WH2X-ray3.4551-60[»]
2WH4X-ray3.4551-60[»]
2WRJX-ray3.6051-60[»]
2WRLX-ray3.6051-60[»]
2WROX-ray3.6051-60[»]
2WRRX-ray3.6051-60[»]
2X9SX-ray3.1051-60[»]
2X9UX-ray3.1051-60[»]
2XG0X-ray3.2051-60[»]
2XG2X-ray3.2051-60[»]
2XQEX-ray3.1051-60[»]
2XTGelectron microscopy7.8051-60[»]
2XUXelectron microscopy7.6051-60[»]
2Y0VX-ray3.1051-60[»]
2Y0XX-ray3.1051-60[»]
2Y0ZX-ray3.1051-60[»]
2Y11X-ray3.1051-60[»]
2Y13X-ray3.1051-60[»]
2Y15X-ray3.1051-60[»]
2Y17X-ray3.1051-60[»]
2Y19X-ray3.1051-60[»]
3FINelectron microscopy6.4052-60[»]
3HUXX-ray3.1051-60[»]
3HUZX-ray3.1051-60[»]
3I8FX-ray3.1051-60[»]
3I8IX-ray3.1051-60[»]
3I9CX-ray3.5051-60[»]
3I9EX-ray3.5051-60[»]
3KIRX-ray3.3051-60[»]
3KITX-ray3.3051-60[»]
3KIWX-ray3.6051-60[»]
3KIYX-ray3.6051-60[»]
3KNIX-ray3.0051-60[»]
3KNKX-ray3.0051-60[»]
3KNMX-ray3.4551-60[»]
3KNOX-ray3.4551-60[»]
3OH5X-ray3.0051-60[»]
3OH7X-ray3.0051-60[»]
3OHJX-ray3.0051-60[»]
3OHKX-ray3.0051-60[»]
3OHZX-ray3.0051-60[»]
3OI1X-ray3.0051-60[»]
3OI3X-ray3.1051-60[»]
3OI5X-ray3.1051-60[»]
3TVEX-ray3.1052-60[»]
3TVHX-ray3.1052-60[»]
3UXQX-ray3.2051-60[»]
3UXRX-ray3.2051-60[»]
3UYEX-ray3.0051-60[»]
3UYGX-ray3.0051-60[»]
3UZ1X-ray3.3051-60[»]
3UZ2X-ray3.3051-60[»]
3UZ8X-ray3.0051-60[»]
3UZ9X-ray3.0051-60[»]
3UZFX-ray3.3051-60[»]
3UZHX-ray3.3051-60[»]
3UZKX-ray3.3051-60[»]
3UZNX-ray3.3051-60[»]
3V23X-ray3.0051-60[»]
3V25X-ray3.0051-60[»]
3V27X-ray3.1051-60[»]
3V29X-ray3.1051-60[»]
3V2DX-ray2.7051-60[»]
3V2FX-ray2.7051-60[»]
3V6WX-ray3.9051-60[»]
3V6XX-ray3.9051-60[»]
3ZN9X-ray3.1051-60[»]
3ZNEX-ray3.1051-60[»]
3ZVPX-ray3.8051-60[»]
4ABSX-ray3.1051-60[»]
4B8GX-ray3.7051-60[»]
4B8IX-ray3.7051-60[»]
4BTDX-ray2.9552-60[»]
4BYCX-ray3.3551-60[»]
4BYEX-ray3.3551-60[»]
4DHAX-ray3.2051-60[»]
4DHCX-ray3.2051-60[»]
4EJBX-ray3.5251-60[»]
4EJCX-ray3.5251-60[»]
4G5LX-ray3.3051-60[»]
4G5NX-ray3.3051-60[»]
4G5UX-ray3.1051-60[»]
4G5WX-ray3.1051-60[»]
4JUXX-ray2.8651-60[»]
4K0MX-ray3.3052-60[»]
4K0QX-ray3.3052-60[»]
4KX0X-ray3.4451-60[»]
4KX2X-ray3.4451-60[»]
4NVVX-ray3.0051-60[»]
4NVXX-ray3.0051-60[»]
4NVZX-ray3.1051-60[»]
4NW1X-ray3.1051-60[»]
4QCNX-ray2.6051-60[»]
4QCPX-ray2.6051-60[»]
4QCRX-ray2.5551-60[»]
4QCTX-ray2.5551-60[»]
4QCVX-ray2.9051-60[»]
4QCXX-ray2.9051-60[»]
4QCZX-ray2.8051-60[»]
4QD1X-ray2.8051-60[»]
ProteinModelPortaliP80339.
SMRiP80339. Positions 2-60.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80339.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L32P family.Curated

Phylogenomic databases

eggNOGiCOG0333.
HOGENOMiHOG000040268.
KOiK02911.
OMAiRTHFKLA.
OrthoDBiEOG6VMTT4.
PhylomeDBiP80339.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32.
InterProiIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view]
PfamiPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80339-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAKHPVPKKK TSKARRDARR SHHALTPPTL VPCPECKAMK PPHTVCPECG
60
YYAGRKVLEV
Length:60
Mass (Da):6,705
Last modified:January 23, 2007 - v5
Checksum:i3B972CB90FF2DE59
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti17 – 171D → A AA sequence (PubMed:11154066)Curated
Sequence conflicti32 – 332PC → VP AA sequence 1 PublicationCurated
Sequence conflicti36 – 361C → I AA sequence 1 PublicationCurated
Sequence conflicti41 – 411P → H AA sequence 1 PublicationCurated

Mass spectrometryi

Molecular mass is 6575 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70241.1.
RefSeqiYP_143684.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70241; BAD70241; BAD70241.
GeneIDi3168304.
KEGGittj:TTHA0418.
PATRICi23955807. VBITheThe93045_0418.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP008226 Genomic DNA. Translation: BAD70241.1 .
RefSeqi YP_143684.1. NC_006461.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1VVM X-ray 3.22 5 1-60 [» ]
1VVO X-ray 3.22 5 1-60 [» ]
1VVQ X-ray 3.90 5 1-60 [» ]
1VVS X-ray 3.90 5 1-60 [» ]
1VVU X-ray 3.90 5 1-60 [» ]
1VVW X-ray 3.90 5 1-60 [» ]
1VVY X-ray 3.92 5 1-60 [» ]
1VW0 X-ray 3.92 5 1-60 [» ]
1VX9 X-ray 2.94 5 1-60 [» ]
1VXJ X-ray 2.94 5 1-60 [» ]
1VXL X-ray 3.48 5 1-60 [» ]
1VXN X-ray 3.48 5 1-60 [» ]
1VXQ X-ray 3.14 5 1-60 [» ]
1VXT X-ray 3.14 5 1-60 [» ]
1VY1 X-ray 3.68 5 1-60 [» ]
1VY3 X-ray 3.68 5 1-60 [» ]
1YL3 X-ray 5.50 5 1-60 [» ]
2HGJ X-ray 5.00 4 1-60 [» ]
2HGQ X-ray 5.50 4 1-60 [» ]
2HGU X-ray 4.51 4 1-60 [» ]
2J01 X-ray 2.80 5 2-60 [» ]
2J03 X-ray 2.80 5 2-60 [» ]
2V47 X-ray 3.50 5 2-60 [» ]
2V49 X-ray 3.50 5 2-60 [» ]
2WDI X-ray 3.30 5 1-60 [» ]
2WDJ X-ray 3.30 5 1-60 [» ]
2WDL X-ray 3.50 5 1-60 [» ]
2WDN X-ray 3.50 5 1-60 [» ]
2WH2 X-ray 3.45 5 1-60 [» ]
2WH4 X-ray 3.45 5 1-60 [» ]
2WRJ X-ray 3.60 5 1-60 [» ]
2WRL X-ray 3.60 5 1-60 [» ]
2WRO X-ray 3.60 5 1-60 [» ]
2WRR X-ray 3.60 5 1-60 [» ]
2X9S X-ray 3.10 5 1-60 [» ]
2X9U X-ray 3.10 5 1-60 [» ]
2XG0 X-ray 3.20 5 1-60 [» ]
2XG2 X-ray 3.20 5 1-60 [» ]
2XQE X-ray 3.10 5 1-60 [» ]
2XTG electron microscopy 7.80 5 1-60 [» ]
2XUX electron microscopy 7.60 5 1-60 [» ]
2Y0V X-ray 3.10 5 1-60 [» ]
2Y0X X-ray 3.10 5 1-60 [» ]
2Y0Z X-ray 3.10 5 1-60 [» ]
2Y11 X-ray 3.10 5 1-60 [» ]
2Y13 X-ray 3.10 5 1-60 [» ]
2Y15 X-ray 3.10 5 1-60 [» ]
2Y17 X-ray 3.10 5 1-60 [» ]
2Y19 X-ray 3.10 5 1-60 [» ]
3FIN electron microscopy 6.40 5 2-60 [» ]
3HUX X-ray 3.10 5 1-60 [» ]
3HUZ X-ray 3.10 5 1-60 [» ]
3I8F X-ray 3.10 5 1-60 [» ]
3I8I X-ray 3.10 5 1-60 [» ]
3I9C X-ray 3.50 5 1-60 [» ]
3I9E X-ray 3.50 5 1-60 [» ]
3KIR X-ray 3.30 5 1-60 [» ]
3KIT X-ray 3.30 5 1-60 [» ]
3KIW X-ray 3.60 5 1-60 [» ]
3KIY X-ray 3.60 5 1-60 [» ]
3KNI X-ray 3.00 5 1-60 [» ]
3KNK X-ray 3.00 5 1-60 [» ]
3KNM X-ray 3.45 5 1-60 [» ]
3KNO X-ray 3.45 5 1-60 [» ]
3OH5 X-ray 3.00 5 1-60 [» ]
3OH7 X-ray 3.00 5 1-60 [» ]
3OHJ X-ray 3.00 5 1-60 [» ]
3OHK X-ray 3.00 5 1-60 [» ]
3OHZ X-ray 3.00 5 1-60 [» ]
3OI1 X-ray 3.00 5 1-60 [» ]
3OI3 X-ray 3.10 5 1-60 [» ]
3OI5 X-ray 3.10 5 1-60 [» ]
3TVE X-ray 3.10 5 2-60 [» ]
3TVH X-ray 3.10 5 2-60 [» ]
3UXQ X-ray 3.20 5 1-60 [» ]
3UXR X-ray 3.20 5 1-60 [» ]
3UYE X-ray 3.00 5 1-60 [» ]
3UYG X-ray 3.00 5 1-60 [» ]
3UZ1 X-ray 3.30 5 1-60 [» ]
3UZ2 X-ray 3.30 5 1-60 [» ]
3UZ8 X-ray 3.00 5 1-60 [» ]
3UZ9 X-ray 3.00 5 1-60 [» ]
3UZF X-ray 3.30 5 1-60 [» ]
3UZH X-ray 3.30 5 1-60 [» ]
3UZK X-ray 3.30 5 1-60 [» ]
3UZN X-ray 3.30 5 1-60 [» ]
3V23 X-ray 3.00 5 1-60 [» ]
3V25 X-ray 3.00 5 1-60 [» ]
3V27 X-ray 3.10 5 1-60 [» ]
3V29 X-ray 3.10 5 1-60 [» ]
3V2D X-ray 2.70 5 1-60 [» ]
3V2F X-ray 2.70 5 1-60 [» ]
3V6W X-ray 3.90 5 1-60 [» ]
3V6X X-ray 3.90 5 1-60 [» ]
3ZN9 X-ray 3.10 5 1-60 [» ]
3ZNE X-ray 3.10 5 1-60 [» ]
3ZVP X-ray 3.80 5 1-60 [» ]
4ABS X-ray 3.10 5 1-60 [» ]
4B8G X-ray 3.70 5 1-60 [» ]
4B8I X-ray 3.70 5 1-60 [» ]
4BTD X-ray 2.95 5 2-60 [» ]
4BYC X-ray 3.35 5 1-60 [» ]
4BYE X-ray 3.35 5 1-60 [» ]
4DHA X-ray 3.20 5 1-60 [» ]
4DHC X-ray 3.20 5 1-60 [» ]
4EJB X-ray 3.52 5 1-60 [» ]
4EJC X-ray 3.52 5 1-60 [» ]
4G5L X-ray 3.30 5 1-60 [» ]
4G5N X-ray 3.30 5 1-60 [» ]
4G5U X-ray 3.10 5 1-60 [» ]
4G5W X-ray 3.10 5 1-60 [» ]
4JUX X-ray 2.86 5 1-60 [» ]
4K0M X-ray 3.30 5 2-60 [» ]
4K0Q X-ray 3.30 5 2-60 [» ]
4KX0 X-ray 3.44 5 1-60 [» ]
4KX2 X-ray 3.44 5 1-60 [» ]
4NVV X-ray 3.00 5 1-60 [» ]
4NVX X-ray 3.00 5 1-60 [» ]
4NVZ X-ray 3.10 5 1-60 [» ]
4NW1 X-ray 3.10 5 1-60 [» ]
4QCN X-ray 2.60 5 1-60 [» ]
4QCP X-ray 2.60 5 1-60 [» ]
4QCR X-ray 2.55 5 1-60 [» ]
4QCT X-ray 2.55 5 1-60 [» ]
4QCV X-ray 2.90 5 1-60 [» ]
4QCX X-ray 2.90 5 1-60 [» ]
4QCZ X-ray 2.80 5 1-60 [» ]
4QD1 X-ray 2.80 5 1-60 [» ]
ProteinModelPortali P80339.
SMRi P80339. Positions 2-60.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 300852.TTHA0418.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD70241 ; BAD70241 ; BAD70241 .
GeneIDi 3168304.
KEGGi ttj:TTHA0418.
PATRICi 23955807. VBITheThe93045_0418.

Phylogenomic databases

eggNOGi COG0333.
HOGENOMi HOG000040268.
KOi K02911.
OMAi RTHFKLA.
OrthoDBi EOG6VMTT4.
PhylomeDBi P80339.

Enzyme and pathway databases

BioCyci TTHE300852:GH8R-439-MONOMER.

Miscellaneous databases

EvolutionaryTracei P80339.

Family and domain databases

HAMAPi MF_00340. Ribosomal_L32.
InterProi IPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
[Graphical view ]
Pfami PF01783. Ribosomal_L32p. 1 hit.
[Graphical view ]
SUPFAMi SSF57829. SSF57829. 1 hit.
TIGRFAMsi TIGR01031. rpmF_bact. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Complete genome sequence of Thermus thermophilus HB8."
    Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
    Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: HB8 / ATCC 27634 / DSM 579.
  2. "The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
    Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
    Endocyt. Cell Res. 11:41-58(1995)
    Cited for: PROTEIN SEQUENCE OF 2-41.
  3. "Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
    Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
    Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 2-17.
  4. "Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
    Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
    Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: MASS SPECTROMETRY.
  5. Cited for: STRUCTURE OF THE RIBOSOME.

Entry informationi

Entry nameiRL32_THET8
AccessioniPrimary (citable) accession number: P80339
Secondary accession number(s): O05480, Q5SL75
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: January 23, 2007
Last modified: October 29, 2014
This is version 111 of the entry and version 5 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3