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P80339 (RL32_THET8) Reviewed, UniProtKB/Swiss-Prot

Last modified May 29, 2013. Version 101. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L32
Gene names
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TTHA0418
OrganismThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) [Reference proteome] [HAMAP]
Taxonomic identifier300852 [NCBI]
Taxonomic lineageBacteria › Deinococcus-Thermus › Deinococci › Thermales › Thermaceae › Thermus ›

Protein attributes

Sequence length60 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Found on the solvent side of the large subunit. HAMAP-Rule MF_00340

Subunit structure

Part of the 50S ribosomal subunit.

Sequence similarities

Belongs to the ribosomal protein L32P family.

Mass spectrometry

Molecular mass is 6575 Da from positions 2 - 60. Determined by MALDI. Ref.4

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Direct protein sequencing
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular_componentlarge ribosomal subunit

Inferred from electronic annotation. Source: InterPro

   Molecular_functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Initiator methionine11Removed Ref.2 Ref.3
Chain2 – 605950S ribosomal protein L32 HAMAP-Rule MF_00340
PRO_0000172427

Experimental info

Sequence conflict171D → A AA sequence Ref.3
Sequence conflict32 – 332PC → VP AA sequence Ref.2
Sequence conflict361C → I AA sequence Ref.2
Sequence conflict411P → H AA sequence Ref.2

Secondary structure

1 ................ 60
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P80339 [UniParc].

Last modified January 23, 2007. Version 5.
Checksum: 3B972CB90FF2DE59

FASTA606,705
        10         20         30         40         50         60 
MAKHPVPKKK TSKARRDARR SHHALTPPTL VPCPECKAMK PPHTVCPECG YYAGRKVLEV

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence of Thermus thermophilus HB8."
Masui R., Kurokawa K., Nakagawa N., Tokunaga F., Koyama Y., Shibata T., Oshima T., Yokoyama S., Yasunaga T., Kuramitsu S.
Submitted (NOV-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: HB8 / ATCC 27634 / DSM 579.
[2]"The isolation and complete amino acid sequence of the ribosomal protein L36 from Thermus thermophilus and its zinc-binding motif."
Boysen R.I., Lorenz S., Kim J.S., Schroeder W.F.K.J., Erdmann V.A.
Endocyt. Cell Res. 11:41-58(1995)
Cited for: PROTEIN SEQUENCE OF 2-41.
[3]"Identification of the 50S ribosomal proteins from the eubacterium Thermus thermophilus."
Katsani K.R., Tsiboli P., Anagnostopoulos K., Urlaub H., Choli-Papadopoulou T.
Biol. Chem. 381:1079-1087(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: PROTEIN SEQUENCE OF 2-17.
[4]"Extending ribosomal protein identifications to unsequenced bacterial strains using matrix-assisted laser desorption/ionization mass spectrometry."
Suh M.-J., Hamburg D.M., Gregory S.T., Dahlberg A.E., Limbach P.A.
Proteomics 5:4818-4831(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: MASS SPECTROMETRY.
[5]"Crystal structure of the ribosome at 5.5 A resolution."
Yusupov M.M., Yusupova G.Z., Baucom A., Lieberman K., Earnest T.N., Cate J.H.D., Noller H.F.
Science 292:883-896(2001) [PubMed] [Europe PMC] [Abstract]
Cited for: STRUCTURE OF THE RIBOSOME.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP008226 Genomic DNA. Translation: BAD70241.1.
RefSeqYP_143684.1. NC_006461.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1YL3X-ray5.5051-58[»]
2HGJX-ray5.0041-60[»]
2HGQX-ray5.5041-60[»]
2HGUX-ray4.5141-60[»]
2J01X-ray2.8051-60[»]
2J03X-ray2.8051-60[»]
2V47X-ray3.8052-59[»]
2V49X-ray3.8052-59[»]
2WDIX-ray3.3051-60[»]
2WDJX-ray3.3051-60[»]
2WDLX-ray3.5051-60[»]
2WDNX-ray3.5051-60[»]
2WH2X-ray3.4551-60[»]
2WH4X-ray3.4551-60[»]
2WRJX-ray3.6051-60[»]
2WRLX-ray3.6051-60[»]
2WROX-ray3.6051-60[»]
2WRRX-ray3.6051-60[»]
2X9SX-ray3.1051-60[»]
2X9UX-ray3.1051-60[»]
2XG0X-ray3.2051-60[»]
2XG2X-ray3.2051-60[»]
2XQEX-ray3.1051-60[»]
2XTGelectron microscopy7.8051-60[»]
2XUXelectron microscopy7.6051-60[»]
2Y0VX-ray3.1051-60[»]
2Y0XX-ray3.1051-60[»]
2Y0ZX-ray3.1051-60[»]
2Y11X-ray3.1051-60[»]
2Y13X-ray3.1051-60[»]
2Y15X-ray3.1051-60[»]
2Y17X-ray3.1051-60[»]
2Y19X-ray3.1051-60[»]
3FINelectron microscopy6.4052-60[»]
3HUXX-ray3.1051-60[»]
3HUZX-ray3.1051-60[»]
3I8FX-ray3.1051-60[»]
3I8IX-ray3.1051-60[»]
3I9CX-ray3.5051-60[»]
3I9EX-ray3.5051-60[»]
3KIRX-ray3.3051-60[»]
3KITX-ray3.3051-60[»]
3KIWX-ray3.6051-60[»]
3KIYX-ray3.6051-60[»]
3KNIX-ray3.0051-60[»]
3KNKX-ray3.0051-60[»]
3KNMX-ray3.4551-60[»]
3KNOX-ray3.4551-60[»]
3OH5X-ray3.0051-60[»]
3OH7X-ray3.0051-60[»]
3OHJX-ray3.0051-60[»]
3OHKX-ray3.0051-60[»]
3OHZX-ray3.0051-60[»]
3OI1X-ray3.0051-60[»]
3OI3X-ray3.1051-60[»]
3OI5X-ray3.1051-60[»]
3TVEX-ray3.1052-60[»]
3TVHX-ray3.1052-60[»]
3UXQX-ray3.2051-60[»]
3UXRX-ray3.2051-60[»]
3UYEX-ray3.0051-60[»]
3UYGX-ray3.0051-60[»]
3UZ1X-ray3.3051-60[»]
3UZ2X-ray3.3051-60[»]
3UZ8X-ray3.0051-60[»]
3UZ9X-ray3.0051-60[»]
3UZFX-ray3.3051-60[»]
3UZHX-ray3.3051-60[»]
3UZKX-ray3.3051-60[»]
3UZNX-ray3.3051-60[»]
3V23X-ray3.0051-60[»]
3V25X-ray3.0051-60[»]
3V27X-ray3.1051-60[»]
3V29X-ray3.1051-60[»]
3V2DX-ray2.7051-60[»]
3V2FX-ray2.7051-60[»]
3ZN9X-ray3.1051-60[»]
3ZNEX-ray3.1051-60[»]
3ZVPX-ray3.8051-60[»]
4ABSX-ray3.1051-60[»]
4B8GX-ray3.7051-60[»]
4B8IX-ray3.7051-60[»]
4DHAX-ray3.2051-60[»]
4DHCX-ray3.2051-60[»]
4G5LX-ray3.3051-60[»]
4G5NX-ray3.3051-60[»]
4G5UX-ray3.1051-60[»]
4G5WX-ray3.1051-60[»]
ProteinModelPortalP80339.
SMRP80339. Positions 2-60.
ModBaseSearch...

Protein-protein interaction databases

STRING300852.TTHA0418.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD70241; BAD70241; BAD70241.
GeneID3168304.
KEGGttj:TTHA0418.
PATRIC23955807. VBITheThe93045_0418.

Phylogenomic databases

eggNOGCOG0333.
HOGENOMHOG000040268.
KOK02911.
OMAQRRTSKT.
ProtClustDBPRK12286.

Enzyme and pathway databases

BioCycTTHE300852:GH8R-439-MONOMER.

Family and domain databases

HAMAPMF_00340. Ribosomal_L32.
InterProIPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd_dom.
[Graphical view]
PfamPF01783. Ribosomal_L32p. 1 hit.
[Graphical view]
SUPFAMSSF57829. Ribosomal_zn-bd. 1 hit.
TIGRFAMsTIGR01031. rpmF_bact. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceP80339.

Entry information

Entry nameRL32_THET8
AccessionPrimary (citable) accession number: P80339
Secondary accession number(s): O05480, Q5SL75
Entry history
Integrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: January 23, 2007
Last modified: May 29, 2013
This is version 101 of the entry and version 5 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

SIMILARITY comments

Index of protein domains and families

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents