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Protein

50S ribosomal protein L32

Gene

rpmF

Organism
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Found on the solvent side of the large subunit.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L32
Gene namesi
Name:rpmF
Synonyms:rpl32
Ordered Locus Names:TTHA0418
OrganismiThermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Taxonomic identifieri300852 [NCBI]
Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciThermalesThermaceaeThermus
Proteomesi
  • UP000000532 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemoved2 Publications
ChainiPRO_00001724272 – 6050S ribosomal protein L32Add BLAST59

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.

Protein-protein interaction databases

STRINGi300852.TTHA0418.

Structurei

Secondary structure

160
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Helixi13 – 19Combined sources7
Helixi20 – 23Combined sources4
Beta strandi34 – 37Combined sources4
Beta strandi52 – 54Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1VVJX-ray3.44R5/Y51-60[»]
1VY4X-ray2.60B5/D51-60[»]
1VY5X-ray2.55B5/D51-60[»]
1VY6X-ray2.90B5/D51-60[»]
1VY7X-ray2.80B5/D51-60[»]
4L47X-ray3.22R5/Y51-60[»]
4L71X-ray3.90R5/Y51-60[»]
4LELX-ray3.90R5/Y51-60[»]
4LFZX-ray3.92R5/Y51-60[»]
4LNTX-ray2.94R5/Y51-60[»]
4LSKX-ray3.48R5/Y51-60[»]
4LT8X-ray3.14R5/Y51-60[»]
4P6FX-ray3.60R5/Y51-60[»]
4P70X-ray3.68R5/Y51-60[»]
4TUAX-ray3.60R5/Y51-60[»]
4TUBX-ray3.60R5/Y51-60[»]
4TUCX-ray3.60R5/Y51-60[»]
4TUDX-ray3.60R5/Y51-60[»]
4TUEX-ray3.50R5/Y51-60[»]
4V4PX-ray5.5051-60[»]
4V4XX-ray5.00B41-60[»]
4V4YX-ray5.50B41-60[»]
4V4ZX-ray4.51B41-60[»]
4V51X-ray2.80B5/D52-60[»]
4V5AX-ray3.50B5/D52-60[»]
4V5CX-ray3.30B5/D51-60[»]
4V5DX-ray3.50B5/D51-60[»]
4V5EX-ray3.45B5/D51-60[»]
4V5FX-ray3.60B5/D51-60[»]
4V5GX-ray3.60B5/D51-60[»]
4V5JX-ray3.10B5/D51-60[»]
4V5KX-ray3.20B5/D51-60[»]
4V5LX-ray3.10B51-60[»]
4V5Melectron microscopy7.80B51-60[»]
4V5Nelectron microscopy7.60B51-60[»]
4V5PX-ray3.10B5/D51-60[»]
4V5QX-ray3.10B5/D51-60[»]
4V5RX-ray3.10B5/D51-60[»]
4V5SX-ray3.10B5/D51-60[»]
4V68electron microscopy6.40B52-60[»]
4V6AX-ray3.10B5/D51-60[»]
4V6FX-ray3.10A5/D51-60[»]
4V6GX-ray3.50B5/D51-60[»]
4V7JX-ray3.30A5/B51-60[»]
4V7KX-ray3.60A5/B51-60[»]
4V7LX-ray3.00B5/D51-60[»]
4V7MX-ray3.45B5/D51-60[»]
4V7WX-ray3.00B5/D51-60[»]
4V7XX-ray3.00B5/D51-60[»]
4V7YX-ray3.00B5/D51-60[»]
4V7ZX-ray3.10B5/D51-60[»]
4V87X-ray3.10A5/D52-60[»]
4V8AX-ray3.20A5/B51-60[»]
4V8BX-ray3.00B5/D51-60[»]
4V8CX-ray3.30A5/B51-60[»]
4V8DX-ray3.00B5/D51-60[»]
4V8EX-ray3.30A5/C51-60[»]
4V8FX-ray3.30A5/D51-60[»]
4V8GX-ray3.00B5/D51-60[»]
4V8HX-ray3.10B5/D51-60[»]
4V8IX-ray2.70B5/D51-60[»]
4V8JX-ray3.90B5/D51-60[»]
4V8NX-ray3.10B5/D51-60[»]
4V8OX-ray3.80B51-60[»]
4V8QX-ray3.10A51-60[»]
4V8UX-ray3.70B5/D51-60[»]
4V8XX-ray3.35B5/D51-60[»]
4V90X-ray2.95B52-60[»]
4V95X-ray3.20B5/D51-60[»]
4V97X-ray3.52B5/D51-60[»]
4V9AX-ray3.30B5/D51-60[»]
4V9BX-ray3.10B5/D51-60[»]
4V9HX-ray2.86B51-60[»]
4V9IX-ray3.30B5/D52-60[»]
4V9RX-ray3.00B5/D51-60[»]
4V9SX-ray3.10B5/D51-60[»]
4W2EX-ray2.9051-60[»]
4W2FX-ray2.40B5/D51-60[»]
4W2GX-ray2.55B5/D51-60[»]
4W2HX-ray2.70B5/D51-60[»]
4W2IX-ray2.70B5/D51-60[»]
4W4GX-ray3.30R5/Y51-60[»]
4WPOX-ray2.80A5/C51-60[»]
4WQ1X-ray3.10J5/N82-60[»]
4WQFX-ray2.80A5/C51-60[»]
4WQRX-ray3.15J5/N81-60[»]
4WQUX-ray2.80A5/C51-60[»]
4WQYX-ray2.80A5/C51-60[»]
4WR6X-ray3.05J5/N81-60[»]
4WRAX-ray3.05J5/N81-60[»]
4WROX-ray3.05N81-60[»]
4WSDX-ray2.95J5/N81-60[»]
4WSMX-ray3.30J5/N81-60[»]
4WT1X-ray3.05J5/N81-60[»]
4WT8X-ray3.40C6/D62-60[»]
4WU1X-ray3.20J5/N81-60[»]
4WZDX-ray3.10J5/N81-60[»]
4WZOX-ray3.30J5/N81-60[»]
4Y4OX-ray2.3015/251-60[»]
4Y4PX-ray2.5015/251-60[»]
4YPBX-ray3.40R5/Y51-60[»]
4YZVX-ray3.10R5/Y51-60[»]
4Z3SX-ray2.6515/251-60[»]
4Z8CX-ray2.9015/251-60[»]
4ZERX-ray3.1015/252-60[»]
4ZSNX-ray3.60R5/Y51-60[»]
5A9Zelectron microscopy4.70Ab4-60[»]
5AA0electron microscopy5.00Ab4-60[»]
5CZPX-ray3.30R5/Y51-60[»]
5D8BX-ray3.63UB/Y1-60[»]
5DFEX-ray3.10R5/Y51-60[»]
5DOXX-ray3.1015/251-60[»]
5DOYX-ray2.6015/251-60[»]
5E7KX-ray3.20J5/N81-60[»]
5E81X-ray2.95J5/N81-60[»]
5EL4X-ray3.15J5/N81-60[»]
5EL5X-ray3.15J5/N81-60[»]
5EL6X-ray3.10J5/N81-60[»]
5EL7X-ray3.15J5/N81-60[»]
5F8KX-ray2.8015/252-60[»]
5FDUX-ray2.9015/252-60[»]
5FDVX-ray2.8015/252-60[»]
5HAUX-ray3.0013/231-60[»]
5HCPX-ray2.8915/251-60[»]
5HCQX-ray2.8015/251-60[»]
5HCRX-ray2.8015/251-60[»]
5HD1X-ray2.7015/251-60[»]
5IB7X-ray2.99J5/N81-60[»]
5IB8X-ray3.13J5/N81-60[»]
5IBBX-ray2.96J5/N81-60[»]
5IMQelectron microscopy3.80w1-60[»]
5IMRelectron microscopy-w1-60[»]
5J30X-ray3.20R5/Y51-60[»]
5J3CX-ray3.04R5/Y51-60[»]
5J4BX-ray2.6015/251-60[»]
5J4CX-ray2.8015/251-60[»]
5J8BX-ray2.6051-60[»]
ProteinModelPortaliP80339.
SMRiP80339.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP80339.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41067VY. Bacteria.
COG0333. LUCA.
HOGENOMiHOG000040268.
KOiK02911.
OMAiHRACRHC.
PhylomeDBiP80339.

Family and domain databases

HAMAPiMF_00340. Ribosomal_L32. 1 hit.
InterProiView protein in InterPro
IPR002677. Ribosomal_L32p.
IPR011332. Ribosomal_zn-bd.
PfamiView protein in Pfam
PF01783. Ribosomal_L32p. 1 hit.
SUPFAMiSSF57829. SSF57829. 1 hit.
TIGRFAMsiTIGR01031. rpmF_bact. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P80339-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKHPVPKKK TSKARRDARR SHHALTPPTL VPCPECKAMK PPHTVCPECG
60
YYAGRKVLEV
Length:60
Mass (Da):6,705
Last modified:January 23, 2007 - v5
Checksum:i3B972CB90FF2DE59
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti17D → A AA sequence (PubMed:11154066).Curated1
Sequence conflicti32 – 33PC → VP AA sequence (Ref. 2) Curated2
Sequence conflicti36C → I AA sequence (Ref. 2) Curated1
Sequence conflicti41P → H AA sequence (Ref. 2) Curated1

Mass spectrometryi

Molecular mass is 6575 Da from positions 2 - 60. Determined by MALDI. 1 Publication

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008226 Genomic DNA. Translation: BAD70241.1.
RefSeqiWP_008631660.1. NC_006461.1.
YP_143684.1. NC_006461.1.

Genome annotation databases

EnsemblBacteriaiBAD70241; BAD70241; BAD70241.
GeneIDi3168304.
KEGGittj:TTHA0418.
PATRICifig|300852.9.peg.418.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiRL32_THET8
AccessioniPrimary (citable) accession number: P80339
Secondary accession number(s): O05480, Q5SL75
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1994
Last sequence update: January 23, 2007
Last modified: June 7, 2017
This is version 137 of the entry and version 5 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families