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Protein
Submitted name:

Homeobox protein

Gene

Cdx-C

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Homeobox proteinImported
Gene namesi
Name:Cdx-CImported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus

Subcellular locationi

  • Nucleus UniRule annotationSAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

NucleusUniRule annotationSAAS annotationImported

Structurei

3D structure databases

ProteinModelPortaliP79788.
SMRiP79788. Positions 180-235.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini176 – 23661Homeobox DNA-bindingInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains homeobox DNA-binding domain.SAAS annotation

Keywords - Domaini

HomeoboxUniRule annotationSAAS annotation

Phylogenomic databases

HOGENOMiHOG000115975.
HOVERGENiHBG005302.
KOiK09312.
PhylomeDBiP79788.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P79788-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYVSYLLDKD GPMYPGPVRH SGGLNLAAQN FVGAAQYADY GGYHVNLDGA
60 70 80 90 100
QSPGPVWAAP YAAPLRDDWG AYGQGAPPPA AAAAVHGLNG GSPAAAMAYS
110 120 130 140 150
PVDFHHHHHH HPHAHHHVGP ETHCSAGGMQ TLGAAPAAAA ASAAPEPLSP
160 170 180 190 200
GGQRRGLCEW VRKPAQAPLG SQVKTRTKDK YRVVYTDHQR LELEKEFHYS
210 220 230 240 250
RYITIRRKAE LASSLGLSER QVKIWFQNRR AKERKINKKK LQQAQRRRGA
260 270
AQPHRPSASR PRGAPPPAGL GPAAPQ
Length:276
Mass (Da):29,758
Last modified:May 1, 1997 - v1
Checksum:i8FC76D3F48CE86C6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U80614 mRNA. Translation: AAB38964.1.
RefSeqiNP_989642.1. NM_204311.1.
UniGeneiGga.967.

Genome annotation databases

GeneIDi374205.
KEGGigga:374205.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U80614 mRNA. Translation: AAB38964.1.
RefSeqiNP_989642.1. NM_204311.1.
UniGeneiGga.967.

3D structure databases

ProteinModelPortaliP79788.
SMRiP79788. Positions 180-235.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi374205.
KEGGigga:374205.

Organism-specific databases

CTDi1045.

Phylogenomic databases

HOGENOMiHOG000115975.
HOVERGENiHBG005302.
KOiK09312.
PhylomeDBiP79788.

Miscellaneous databases

NextBioi20813709.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR006820. Caudal_activation_dom.
IPR017970. Homeobox_CS.
IPR001356. Homeobox_dom.
IPR020479. Homeobox_metazoa.
IPR009057. Homeodomain-like.
IPR000047. HTH_motif.
[Graphical view]
PfamiPF04731. Caudal_act. 1 hit.
PF00046. Homeobox. 1 hit.
[Graphical view]
PRINTSiPR00024. HOMEOBOX.
PR00031. HTHREPRESSR.
SMARTiSM00389. HOX. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS00027. HOMEOBOX_1. 1 hit.
PS50071. HOMEOBOX_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The chicken caudal genes establish an anterior-posterior gradient by partially overlapping temporal and spatial patterns of expression."
    Marom K., Shapira E., Fainsod A.
    Mech. Dev. 64:41-52(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Tissue: Intestinal mucosaImported.

Entry informationi

Entry nameiP79788_CHICK
AccessioniPrimary (citable) accession number: P79788
Entry historyi
Integrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: May 11, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.