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Protein

ELAV-like protein

Gene

elavl3

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • regulation of neurogenesis Source: ZFIN

Keywordsi

Molecular functionRNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
ELAV-like proteinUniRule annotation
Gene namesi
Name:elavl3Imported
Synonyms:zHuCImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-980526-76. elavl3.

PTM / Processingi

Proteomic databases

PaxDbiP79736.

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000030680.

Structurei

3D structure databases

ProteinModelPortaliP79736.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini38 – 116RRM (RNA recognition motif)InterPro annotationAdd BLAST79
Domaini124 – 204RRM (RNA recognition motif)InterPro annotationAdd BLAST81
Domaini262 – 340RRM (RNA recognition motif)InterPro annotationAdd BLAST79

Sequence similaritiesi

Belongs to the RRM elav family.UniRule annotation

Keywords - Domaini

RepeatSAAS annotation

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
KOiK13208.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiView protein in InterPro
IPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
PfamiView protein in Pfam
PF00076. RRM_1. 3 hits.
PRINTSiPR00961. HUDSXLRNA.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SM00361. RRM_1. 2 hits.
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 3 hits.

Sequencei

Sequence statusi: Complete.

P79736-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVTIISTMET QVSNGPSGTS LPNGPVISTN GATDDSKTNL IVNYLPQNMT
60 70 80 90 100
QEEFKSLFGS IGEIESCKLV RDKITGQSLG YGFVNYVDPN DADKAINTLN
110 120 130 140 150
GLKLQTKTIK VSYARPSSAS IRDANLYVSG LPKTMSQKDM EQLFSQYGRI
160 170 180 190 200
ITSRILVNQV TGISRGVGFI RFDKRNEAEE AIKGLNGQKP LGAAEPITVK
210 220 230 240 250
FANNPSQKTG QALLTQLYQT AARRYTGPLH HQTQRFRFSP ITIDSMTSLA
260 270 280 290 300
GVNLTGPTGA GWCIFVYNLS PEADESVLWQ LFGPFGAVTN VKVIRDFTTN
310 320 330 340
KCKGFGFVTM TNYDEAAMAI ASLNGYRLGD RVLQVSFKTS KQHKA
Length:345
Mass (Da):37,681
Last modified:May 1, 1997 - v1
Checksum:i01DF10EDD9C957C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U62018 mRNA. Translation: AAB36515.1.
RefSeqiNP_571524.1. NM_131449.1.
UniGeneiDr.75060.

Genome annotation databases

GeneIDi30732.
KEGGidre:30732.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U62018 mRNA. Translation: AAB36515.1.
RefSeqiNP_571524.1. NM_131449.1.
UniGeneiDr.75060.

3D structure databases

ProteinModelPortaliP79736.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000030680.

Proteomic databases

PaxDbiP79736.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi30732.
KEGGidre:30732.

Organism-specific databases

CTDi1995.
ZFINiZDB-GENE-980526-76. elavl3.

Phylogenomic databases

eggNOGiKOG0145. Eukaryota.
ENOG410XP7S. LUCA.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
KOiK13208.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiView protein in InterPro
IPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
PfamiView protein in Pfam
PF00076. RRM_1. 3 hits.
PRINTSiPR00961. HUDSXLRNA.
SMARTiView protein in SMART
SM00360. RRM. 3 hits.
SM00361. RRM_1. 2 hits.
SUPFAMiSSF54928. SSF54928. 3 hits.
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiView protein in PROSITE
PS50102. RRM. 3 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiP79736_DANRE
AccessioniPrimary (citable) accession number: P79736
Entry historyiIntegrated into UniProtKB/TrEMBL: May 1, 1997
Last sequence update: May 1, 1997
Last modified: February 15, 2017
This is version 99 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.