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Protein

60S ribosomal protein L6

Gene

rpl6

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-SPO-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-SPO-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-SPO-72689. Formation of a pool of free 40S subunits.
R-SPO-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-SPO-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-SPO-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L6
Gene namesi
Name:rpl6
ORF Names:SPCC622.18
OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Taxonomic identifieri284812 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
Proteomesi
  • UP000002485 Componenti: Chromosome III

Organism-specific databases

EuPathDBiFungiDB:SPCC622.18.
PomBaseiSPCC622.18. rpl6.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001710162 – 19560S ribosomal protein L6Add BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei105Phosphoserine1 Publication1
Modified residuei115Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiP79071.
PRIDEiP79071.

PTM databases

iPTMnetiP79071.

Interactioni

Protein-protein interaction databases

BioGridi275938. 6 interactors.
IntActiP79071. 2 interactors.
MINTiMINT-4692038.
STRINGi4896.SPCC622.18.1.

Structurei

3D structure databases

ProteinModelPortaliP79071.
SMRiP79071.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000207317.
InParanoidiP79071.
KOiK02934.
OMAiRKGDKPH.
OrthoDBiEOG092C5AV0.
PhylomeDBiP79071.

Family and domain databases

Gene3Di2.30.30.30. 1 hit.
InterProiView protein in InterPro
IPR000915. 60S_ribosomal_L6E.
IPR014722. Rib_L2_dom2.
IPR008991. Translation_prot_SH3-like.
PANTHERiPTHR10715. PTHR10715. 1 hit.
PfamiView protein in Pfam
PF01159. Ribosomal_L6e. 1 hit.
SUPFAMiSSF50104. SSF50104. 1 hit.
PROSITEiView protein in PROSITE
PS01170. RIBOSOMAL_L6E. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P79071-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTVKVNGAK NGGERMVLPA GEAAAKYYPA YRENVPKKAR KAVRPTKLRA
60 70 80 90 100
SLAPGTVCIL LAGRFRGKRV VVLSQLEDTL VVTGPYKVNG VPIRRVNHRY
110 120 130 140 150
VIATSAPKID VSGVSVEKFT KAYFAKQKRS GPVKKDEAFF AENAPKNALP
160 170 180 190
AERIADQKAV DAKLLPAIKA IPNMKEYLAA SFALSNGDRP HLMKF
Length:195
Mass (Da):21,248
Last modified:January 23, 2007 - v2
Checksum:i5C3C2C0BC92786DB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB001833 mRNA. Translation: BAA19457.1.
CU329672 Genomic DNA. Translation: CAA21874.1.
PIRiT41499.
RefSeqiNP_588190.1. NM_001023180.2.

Genome annotation databases

EnsemblFungiiSPCC622.18.1; SPCC622.18.1:pep; SPCC622.18.
GeneIDi2539372.
KEGGispo:SPCC622.18.

Similar proteinsi

Entry informationi

Entry nameiRL6_SCHPO
AccessioniPrimary (citable) accession number: P79071
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: January 23, 2007
Last modified: August 30, 2017
This is version 119 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families