##gff-version 3 P78423 UniProtKB Signal peptide 1 24 . . . . P78423 UniProtKB Chain 25 397 . . . ID=PRO_0000005252;Note=Fractalkine P78423 UniProtKB Chain 25 339 . . . ID=PRO_0000296224;Note=Processed fractalkine P78423 UniProtKB Topological domain 25 341 . . . Note=Extracellular;Ontology_term=ECO:0000255;evidence=ECO:0000255 P78423 UniProtKB Transmembrane 342 362 . . . Note=Helical;Ontology_term=ECO:0000255;evidence=ECO:0000255 P78423 UniProtKB Topological domain 363 397 . . . Note=Cytoplasmic;Ontology_term=ECO:0000255;evidence=ECO:0000255 P78423 UniProtKB Region 25 100 . . . Note=Chemokine and involved in interaction with ITGAV:ITGB3 and ITGA4:ITGB1;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Region 101 341 . . . Note=Mucin-like stalk P78423 UniProtKB Region 128 265 . . . Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite P78423 UniProtKB Region 289 309 . . . Note=Disordered;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite P78423 UniProtKB Compositional bias 130 171 . . . Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite P78423 UniProtKB Compositional bias 214 256 . . . Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite P78423 UniProtKB Compositional bias 289 303 . . . Note=Polar residues;Ontology_term=ECO:0000256;evidence=ECO:0000256|SAM:MobiDB-lite P78423 UniProtKB Site 339 340 . . . Note=Cleavage%3B to produce soluble form;Ontology_term=ECO:0000255;evidence=ECO:0000255 P78423 UniProtKB Glycosylation 33 33 . . . Note=N-linked (GlcNAc...) asparagine;Ontology_term=ECO:0000255;evidence=ECO:0000255 P78423 UniProtKB Glycosylation 183 183 . . . Note=O-linked (GalNAc...) threonine;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:22171320;Dbxref=PMID:22171320 P78423 UniProtKB Glycosylation 253 253 . . . Note=O-linked (GalNAc...) serine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:19838169,ECO:0000269|PubMed:22171320;Dbxref=PMID:19838169,PMID:22171320 P78423 UniProtKB Glycosylation 329 329 . . . Note=O-linked (GalNAc...) threonine;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:19838169,ECO:0000269|PubMed:22171320;Dbxref=PMID:19838169,PMID:22171320 P78423 UniProtKB Disulfide bond 32 58 . . . Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10770945;Dbxref=PMID:10770945 P78423 UniProtKB Disulfide bond 36 74 . . . Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:10770945;Dbxref=PMID:10770945 P78423 UniProtKB Natural variant 240 240 . . . ID=VAR_048714;Note=A->V;Dbxref=dbSNP:rs35860084 P78423 UniProtKB Mutagenesis 60 60 . . . Note=Reduced binding to integrin ITGAV:ITGB3%2C but no effect on binding to CX3CR1%3B when associated with A-61. K->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Mutagenesis 60 60 . . . Note=Dominant-negative mutant%2C reduced binding to integrins ITGAV:ITGB3 and ITGA4:ITGB1%2C no effect on binding to CX3CR1%2C defective in ternary complex formation%2C integrin activation and fractalkine signaling and suppression of leukocyte recruitment in the peritonitis model in vivo%3B when associated with E-61. K->E;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:23125415,ECO:0000269|PubMed:24789099;Dbxref=PMID:23125415,PMID:24789099 P78423 UniProtKB Mutagenesis 61 61 . . . Note=Reduced binding to integrin ITGAV:ITGB3%2C but no effect on binding to CX3CR1%3B when associated with A-60. R->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Mutagenesis 61 61 . . . Note=Dominant-negative mutant%2C reduced binding to integrins ITGAV:ITGB3 and ITGA4:ITGB1%2C no effect on binding to CX3CR1%2C defective in ternary complex formation%2C integrin activation and fractalkine signaling and suppression of leukocyte recruitment in the peritonitis model in vivo%3B when associated with E-60. R->E;Ontology_term=ECO:0000269,ECO:0000269;evidence=ECO:0000269|PubMed:23125415,ECO:0000269|PubMed:24789099;Dbxref=PMID:23125415,PMID:24789099 P78423 UniProtKB Mutagenesis 71 71 . . . Note=Loss of binding to CX3CR1 and ability to induce chemotaxis but no effect on binding to integrins. R->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Mutagenesis 78 78 . . . Note=Little or no effect on binding to integrin ITGAV:ITGB3. K->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Mutagenesis 78 78 . . . Note=Little or no effect on binding to integrin ITGAV:ITGB3%3B when associated with A-83. K->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Mutagenesis 83 83 . . . Note=Little or no effect on binding to integrin ITGAV:ITGB3%3B when associated with A-78. K->A;Ontology_term=ECO:0000269;evidence=ECO:0000269|PubMed:23125415;Dbxref=PMID:23125415 P78423 UniProtKB Helix 27 29 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:7RKM P78423 UniProtKB Beta strand 34 36 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Helix 45 47 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Beta strand 48 53 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Helix 56 58 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Beta strand 59 61 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:3ONA P78423 UniProtKB Beta strand 63 67 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Turn 68 70 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:3ONA P78423 UniProtKB Beta strand 72 75 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Helix 80 90 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L P78423 UniProtKB Helix 93 96 . . . Ontology_term=ECO:0007829;evidence=ECO:0007829|PDB:1F2L