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Protein

RNA polymerase sigma factor RpoS

Gene

rpoS

Organism
Pectobacterium carotovorum (Erwinia carotovora)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi288 – 307H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoSUniRule annotation
Alternative name(s):
Sigma SUniRule annotation
Sigma-38UniRule annotation
Gene namesi
Name:rpoSUniRule annotationImported
OrganismiPectobacterium carotovorum (Erwinia carotovora)Imported
Taxonomic identifieri554 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesPectobacteriaceaePectobacterium

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP77860.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini118 – 131RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini287 – 313RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni56 – 89Sigma-70 factor domain-1UniRule annotationAdd BLAST34
Regioni94 – 164Sigma-70 factor domain-2UniRule annotationAdd BLAST71
Regioni174 – 249Sigma-70 factor domain-3UniRule annotationAdd BLAST76
Regioni262 – 315Sigma-70 factor domain-4UniRule annotationAdd BLAST54

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi118 – 121Interaction with polymerase core subunit RpoCUniRule annotation4

Phylogenomic databases

eggNOGiENOG4105DG1. Bacteria.
COG0568. LUCA.

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
HAMAPiMF_00959. Sigma70_RpoS. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012761. RNA_pol_sigma_RpoS.
IPR036388. WH-like_DNA-bd_sf.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02394. rpoS_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P77860-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQSTLKVNE LHEDTDFEEN GLDVFDDKAL AEEDTNDNDS AEDELLSQGV
60 70 80 90 100
PQRVLDATQL YLGEIGYSPL LTAEEEVYFA RRALRGDVPS RRRMIESNLR
110 120 130 140 150
LVVKIARRYN NRGLALLDLI EEGNLGLIRA VEKFDPERGF RFSTYATWWI
160 170 180 190 200
RQTIERAIMN QTRTIRLPIH IVKELNVYLR TARELSHKLD HEPSAEEIAE
210 220 230 240 250
QLDKPVDDVN RMLALNERIT SVDTPLGGDS EKALLDILAD EKDNGPEDTT
260 270 280 290 300
QDNDMKQNIV KWLFELNAKQ REVLARRFGL LGYEAATLED VGREIGLTRE
310 320 330
RVRQIQVEGL RRLREILQVQ GLSIEELFRE
Length:330
Mass (Da):38,015
Last modified:February 1, 1997 - v1
Checksum:iDA665D536137F6BA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U66542 Genomic DNA. Translation: AAC46141.1.

Similar proteinsi

Entry informationi

Entry nameiP77860_PECCA
AccessioniPrimary (citable) accession number: P77860
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: October 25, 2017
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)