Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

RNA polymerase sigma factor RpoH

Gene

rpoH1

Organism
Bradyrhizobium japonicum
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi254 – 273H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processStress responseUniRule annotation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoHUniRule annotation
Alternative name(s):
RNA polymerase sigma-32 factorUniRule annotation
Gene namesi
Name:rpoH1Imported
Synonyms:rpoHUniRule annotation
OrganismiBradyrhizobium japonicumImported
Taxonomic identifieri375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP77830
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini77 – 90RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini253 – 279RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni53 – 122Sigma-70 factor domain-2UniRule annotationAdd BLAST70

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili217 – 237Sequence analysisAdd BLAST21
Coiled coili254 – 274Sequence analysisAdd BLAST21

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi77 – 80Interaction with polymerase core subunit RpoCUniRule annotation4

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG4105DEK Bacteria
COG0568 LUCA
HOGENOMiHOG000270269

Family and domain databases

HAMAPiMF_00961 Sigma70_RpoH, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR009042 RNA_pol_sigma70_r1_2
IPR007627 RNA_pol_sigma70_r2
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR012759 RNA_pol_sigma_RpoH_proteobac
PfamiView protein in Pfam
PF00140 Sigma70_r1_2, 1 hit
PF04542 Sigma70_r2, 1 hit
PF04545 Sigma70_r4, 1 hit
PIRSFiPIRSF000770 RNA_pol_sigma-SigE/K, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 1 hit
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02392 rpoH_proteo, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNNAALPAP SVDAGLSKYL VEIRKFPLLT PEQELAYARR WREHRDRDAA
60 70 80 90 100
YHLVTSHLRL VAKIAMRYRG YGLPIAEIVS EGNIGLMQAV RRFDPDRGVR
110 120 130 140 150
LATYAMWWIR ASIQEYILRS WSLVKIAASA SQKKLFFKLR RAKSAISALQ
160 170 180 190 200
DGDLRPEQVR LIAERLKVAE RDVVAMDRRL RGDASLNVPI HDEDEGGQTL
210 220 230 240 250
DWLVDPAPTC EITLAEEQEA KQRRLALANA LANLNARERN IFTARWLNEE
260 270 280 290 300
STTLEELAAE YGVSRERVRQ IEERAFQKVK AAMLTSRHEA NGPPSSRAKE

MKQGVARA
Length:308
Mass (Da):35,042
Last modified:February 1, 1997 - v1
Checksum:iAD63095BB2A120C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55047 Genomic DNA Translation: AAC44755.1

Similar proteinsi

Entry informationi

Entry nameiP77830_BRAJP
AccessioniPrimary (citable) accession number: P77830
Secondary accession number(s): D4AEU1, E7FHC8, Q79U71
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: May 23, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health