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Protein

RNA polymerase sigma factor RpoH

Gene

rpoH1

Organism
Bradyrhizobium japonicum
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi254 – 27320H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotation

Keywords - Biological processi

Stress responseUniRule annotation, Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoHUniRule annotation
Alternative name(s):
RNA polymerase sigma-32 factorUniRule annotation
Gene namesi
Name:rpoH1Imported
Synonyms:rpoHUniRule annotation
OrganismiBradyrhizobium japonicumImported
Taxonomic identifieri375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Protein-protein interaction databases

STRINGi224911.blr5231.

Structurei

3D structure databases

ProteinModelPortaliP77830.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini77 – 9014RNA_pol_sigma70InterPro annotationAdd
BLAST
Domaini253 – 27927RNA_pol_sigma70InterPro annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni53 – 12270Sigma-70 factor domain-2UniRule annotationAdd
BLAST
Regioni230 – 28152Sigma-70 factor domain-4UniRule annotationAdd
BLAST

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi77 – 804Interaction with polymerase core subunit RpoCUniRule annotation

Phylogenomic databases

eggNOGiENOG4105DEK. Bacteria.
COG0568. LUCA.
HOGENOMiHOG000270269.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00961. Sigma70_RpoH. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012759. RNA_pol_sigma_RpoH_proteobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02392. rpoH_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNNAALPAP SVDAGLSKYL VEIRKFPLLT PEQELAYARR WREHRDRDAA
60 70 80 90 100
YHLVTSHLRL VAKIAMRYRG YGLPIAEIVS EGNIGLMQAV RRFDPDRGVR
110 120 130 140 150
LATYAMWWIR ASIQEYILRS WSLVKIAASA SQKKLFFKLR RAKSAISALQ
160 170 180 190 200
DGDLRPEQVR LIAERLKVAE RDVVAMDRRL RGDASLNVPI HDEDEGGQTL
210 220 230 240 250
DWLVDPAPTC EITLAEEQEA KQRRLALANA LANLNARERN IFTARWLNEE
260 270 280 290 300
STTLEELAAE YGVSRERVRQ IEERAFQKVK AAMLTSRHEA NGPPSSRAKE

MKQGVARA
Length:308
Mass (Da):35,042
Last modified:February 1, 1997 - v1
Checksum:iAD63095BB2A120C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55047 Genomic DNA. Translation: AAC44755.1.

Genome annotation databases

PATRICi21194120. VBIBraJap65052_5304.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55047 Genomic DNA. Translation: AAC44755.1.

3D structure databases

ProteinModelPortaliP77830.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224911.blr5231.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

PATRICi21194120. VBIBraJap65052_5304.

Phylogenomic databases

eggNOGiENOG4105DEK. Bacteria.
COG0568. LUCA.
HOGENOMiHOG000270269.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00961. Sigma70_RpoH. 1 hit.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR016263. RNA_pol_sigma_factor.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012759. RNA_pol_sigma_RpoH_proteobac.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PIRSFiPIRSF000770. RNA_pol_sigma-SigE/K. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02392. rpoH_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiP77830_BRAJP
AccessioniPrimary (citable) accession number: P77830
Secondary accession number(s): D4AEU1, E7FHC8, Q79U71
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: July 6, 2016
This is version 116 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.