Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

RNA polymerase sigma factor RpoH

Gene

rpoH1

Organism
Bradyrhizobium japonicum
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi254 – 273H-T-H motifUniRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingUniRule annotationSAAS annotation, Sigma factorUniRule annotationSAAS annotation
Biological processStress responseUniRule annotation, Transcription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factor RpoHUniRule annotation
Alternative name(s):
RNA polymerase sigma-32 factorUniRule annotation
Gene namesi
Name:rpoH1Imported
Synonyms:rpoHUniRule annotation
OrganismiBradyrhizobium japonicumImported
Taxonomic identifieri375 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Interacts with the RNA polymerase core enzyme.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP77830.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini77 – 90RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini253 – 279RNA_pol_sigma70InterPro annotationAdd BLAST27

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni53 – 122Sigma-70 factor domain-2UniRule annotationAdd BLAST70

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi77 – 80Interaction with polymerase core subunit RpoCUniRule annotation4

Phylogenomic databases

eggNOGiENOG4105DEK. Bacteria.
COG0568. LUCA.
HOGENOMiHOG000270269.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
HAMAPiMF_00961. Sigma70_RpoH. 1 hit.
InterProiView protein in InterPro
IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR009042. RNA_pol_sigma70_r1_2.
IPR007627. RNA_pol_sigma70_r2.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012759. RNA_pol_sigma_RpoH_proteobac.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00140. Sigma70_r1_2. 1 hit.
PF04542. Sigma70_r2. 1 hit.
PF04545. Sigma70_r4. 1 hit.
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 1 hit.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02392. rpoH_proteo. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiView protein in PROSITE
PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P77830-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MFNNAALPAP SVDAGLSKYL VEIRKFPLLT PEQELAYARR WREHRDRDAA
60 70 80 90 100
YHLVTSHLRL VAKIAMRYRG YGLPIAEIVS EGNIGLMQAV RRFDPDRGVR
110 120 130 140 150
LATYAMWWIR ASIQEYILRS WSLVKIAASA SQKKLFFKLR RAKSAISALQ
160 170 180 190 200
DGDLRPEQVR LIAERLKVAE RDVVAMDRRL RGDASLNVPI HDEDEGGQTL
210 220 230 240 250
DWLVDPAPTC EITLAEEQEA KQRRLALANA LANLNARERN IFTARWLNEE
260 270 280 290 300
STTLEELAAE YGVSRERVRQ IEERAFQKVK AAMLTSRHEA NGPPSSRAKE

MKQGVARA
Length:308
Mass (Da):35,042
Last modified:February 1, 1997 - v1
Checksum:iAD63095BB2A120C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U55047 Genomic DNA. Translation: AAC44755.1.

Similar proteinsi

Entry informationi

Entry nameiP77830_BRAJP
AccessioniPrimary (citable) accession number: P77830
Secondary accession number(s): D4AEU1, E7FHC8, Q79U71
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: August 30, 2017
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.UniRule annotation