ID   P77826_BORGR            Unreviewed;       450 AA.
AC   P77826;
DT   01-FEB-1997, integrated into UniProtKB/TrEMBL.
DT   01-FEB-1997, sequence version 1.
DT   27-MAR-2024, entry version 108.
DE   SubName: Full=Primary sigma factor {ECO:0000313|EMBL:AAC45105.1};
DE   Flags: Fragment;
GN   Name=rpoD {ECO:0000313|EMBL:AAC45105.1};
OS   Borreliella garinii (Borrelia garinii).
OC   Bacteria; Spirochaetota; Spirochaetia; Spirochaetales; Borreliaceae;
OC   Borreliella.
OX   NCBI_TaxID=29519 {ECO:0000313|EMBL:AAC45105.1};
RN   [1] {ECO:0000313|EMBL:AAC45105.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=K48 {ECO:0000313|EMBL:AAC45105.1};
RA   Pan M.;
RL   Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases.
RN   [2] {ECO:0000313|EMBL:AAC45105.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=K48 {ECO:0000313|EMBL:AAC45105.1};
RX   PubMed=9084142; DOI=10.1016/S0378-1097(97)00024-4;
RA   Pan M.-J., Tsai C.-P., Yeh J.C.;
RT   "Sequence diversity of a gene encoding a putative primary sigma factor
RT   among Borrelia burgdorferi sensu lato strains.";
RL   FEMS Microbiol. Lett. 148:153-158(1997).
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; U68012; AAC45105.1; -; Genomic_DNA.
DR   AlphaFoldDB; P77826; -.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   CDD; cd06171; Sigma70_r4; 1.
DR   Gene3D; 1.10.601.10; RNA Polymerase Primary Sigma Factor; 1.
DR   Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR   HAMAP; MF_00963; Sigma70_RpoD_SigA; 1.
DR   InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR   InterPro; IPR000943; RNA_pol_sigma70.
DR   InterPro; IPR007627; RNA_pol_sigma70_r2.
DR   InterPro; IPR007624; RNA_pol_sigma70_r3.
DR   InterPro; IPR007630; RNA_pol_sigma70_r4.
DR   InterPro; IPR013325; RNA_pol_sigma_r2.
DR   InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR   InterPro; IPR012760; RNA_pol_sigma_RpoD_C.
DR   InterPro; IPR028630; Sigma70_RpoD.
DR   InterPro; IPR036388; WH-like_DNA-bd_sf.
DR   NCBIfam; TIGR02393; RpoD_Cterm; 1.
DR   NCBIfam; TIGR02937; sigma70-ECF; 1.
DR   PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR   PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR   Pfam; PF04542; Sigma70_r2; 1.
DR   Pfam; PF04539; Sigma70_r3; 1.
DR   Pfam; PF04545; Sigma70_r4; 1.
DR   PRINTS; PR00046; SIGMA70FCT.
DR   SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR   SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR   PROSITE; PS00715; SIGMA70_1; 1.
DR   PROSITE; PS00716; SIGMA70_2; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT   DOMAIN          255..268
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00715"
FT   DOMAIN          424..450
FT                   /note="RNA polymerase sigma-70"
FT                   /evidence="ECO:0000259|PROSITE:PS00716"
FT   NON_TER         1
FT                   /evidence="ECO:0000313|EMBL:AAC45105.1"
FT   NON_TER         450
FT                   /evidence="ECO:0000313|EMBL:AAC45105.1"
SQ   SEQUENCE   450 AA;  53109 MW;  116292CAB8984F1B CRC64;
     QMDSGESIIE NILKNEGLVI ENYYNLINTI YSRMEREEFF KREKDKDKES NPDYYNKKKR
     IASFYKIPLK PIQDRLISYV DNKHRVYELG GDIFEKNLKS ERLALKELLR NVPLYQDELR
     IFSDDYIDSA NKIKDLQRQQ RIILSRLKIE KIRDLRVLGR DLTIAEKRIE IEKSLKLKED
     AIKEQITEAQ LAQKELERIE MYYEYPMDKI ISMSEEIAKG KQMMQHAKDQ LIKANLRLVV
     SIAKKYANRG LHFFDLVQEG NIGLIKAVEK FEYKRGFKFS TYATWWIRQA ITRSISDQAR
     TIRVPVHMIE QINRLNRETR YLVQVLGKDP TDEELSDRLG WELKKVKTVK SVSREPVSLE
     TPIGEEEDSV LSDFIEDKAI KNPANHTSFV VLQDQIRSIL GTLPEREQEV VKMRFGLEDG
     YSLTLEEVGL HFNVTRERIR QIESKALRRL
//