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P77826

- P77826_BORGR

UniProt

P77826 - P77826_BORGR

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Protein

RNA polymerase sigma factor

Gene
rpoD
Organism
Borrelia garinii
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity.UniRule annotation

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro
  3. sigma factor activity Source: UniProtKB-KW

GO - Biological processi

  1. DNA-templated transcription, initiation Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Sigma factorUniRule annotationSAAS annotations

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-bindingUniRule annotationSAAS annotations

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase sigma factorUniRule annotation
Gene namesi
Name:rpoDImported
OrganismiBorrelia gariniiImported
Taxonomic identifieri29519 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeBorreliaBorrelia burgdorferi group

Structurei

3D structure databases

ProteinModelPortaliP77826.

Family & Domainsi

Sequence similaritiesi

Belongs to the sigma-70 factor family.UniRule annotation

Family and domain databases

Gene3Di1.10.10.10. 2 hits.
HAMAPiMF_00963. Sigma70_RpoD_SigA.
InterProiIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR028630. Sigma70_RpoD.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSiPR00046. SIGMA70FCT.
SUPFAMiSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsiTIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEiPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

P77826-1 [UniParc]FASTAAdd to Basket

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QMDSGESIIE NILKNEGLVI ENYYNLINTI YSRMEREEFF KREKDKDKES    50
NPDYYNKKKR IASFYKIPLK PIQDRLISYV DNKHRVYELG GDIFEKNLKS 100
ERLALKELLR NVPLYQDELR IFSDDYIDSA NKIKDLQRQQ RIILSRLKIE 150
KIRDLRVLGR DLTIAEKRIE IEKSLKLKED AIKEQITEAQ LAQKELERIE 200
MYYEYPMDKI ISMSEEIAKG KQMMQHAKDQ LIKANLRLVV SIAKKYANRG 250
LHFFDLVQEG NIGLIKAVEK FEYKRGFKFS TYATWWIRQA ITRSISDQAR 300
TIRVPVHMIE QINRLNRETR YLVQVLGKDP TDEELSDRLG WELKKVKTVK 350
SVSREPVSLE TPIGEEEDSV LSDFIEDKAI KNPANHTSFV VLQDQIRSIL 400
GTLPEREQEV VKMRFGLEDG YSLTLEEVGL HFNVTRERIR QIESKALRRL 450
Length:450
Mass (Da):53,109
Last modified:February 1, 1997 - v1
Checksum:i116292CAB8984F1B
GO

Non-terminal residue

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported
Non-terminal residuei450 – 4501Imported

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U68012 Genomic DNA. Translation: AAC45105.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U68012 Genomic DNA. Translation: AAC45105.1 .

3D structure databases

ProteinModelPortali P77826.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Family and domain databases

Gene3Di 1.10.10.10. 2 hits.
HAMAPi MF_00963. Sigma70_RpoD_SigA.
InterProi IPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR028630. Sigma70_RpoD.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view ]
PRINTSi PR00046. SIGMA70FCT.
SUPFAMi SSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsi TIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEi PS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Pan M.
    Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K48Imported.
  2. "Sequence diversity of a gene encoding a putative primary sigma factor among Borrelia burgdorferi sensu lato strains."
    Pan M.-J., Tsai C.-P., Yeh J.C.
    FEMS Microbiol. Lett. 148:153-158(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: K48Imported.

Entry informationi

Entry nameiP77826_BORGR
AccessioniPrimary (citable) accession number: P77826
Entry historyi
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: February 19, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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