Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P77826 (P77826_BORGR) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
RNA polymerase sigma factor RuleBase RU000715
Gene names
Name:rpoD EMBL AAC45105.1
OrganismBorrelia garinii EMBL AAC45105.1
Taxonomic identifier29519 [NCBI]
Taxonomic lineageBacteriaSpirochaetesSpirochaetalesSpirochaetaceaeBorreliaBorrelia burgdorferi group

Protein attributes

Sequence length450 AA.
Sequence statusFragment.
Protein existenceInferred from homology

General annotation (Comments)

Function

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715

Sequence similarities

Belongs to the sigma-70 factor family. RuleBase RU000715

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL AAC45105.1
Non-terminal residue4501 EMBL AAC45105.1

Sequences

Sequence LengthMass (Da)Tools
P77826 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: 116292CAB8984F1B

FASTA45053,109
        10         20         30         40         50         60 
QMDSGESIIE NILKNEGLVI ENYYNLINTI YSRMEREEFF KREKDKDKES NPDYYNKKKR 

        70         80         90        100        110        120 
IASFYKIPLK PIQDRLISYV DNKHRVYELG GDIFEKNLKS ERLALKELLR NVPLYQDELR 

       130        140        150        160        170        180 
IFSDDYIDSA NKIKDLQRQQ RIILSRLKIE KIRDLRVLGR DLTIAEKRIE IEKSLKLKED 

       190        200        210        220        230        240 
AIKEQITEAQ LAQKELERIE MYYEYPMDKI ISMSEEIAKG KQMMQHAKDQ LIKANLRLVV 

       250        260        270        280        290        300 
SIAKKYANRG LHFFDLVQEG NIGLIKAVEK FEYKRGFKFS TYATWWIRQA ITRSISDQAR 

       310        320        330        340        350        360 
TIRVPVHMIE QINRLNRETR YLVQVLGKDP TDEELSDRLG WELKKVKTVK SVSREPVSLE 

       370        380        390        400        410        420 
TPIGEEEDSV LSDFIEDKAI KNPANHTSFV VLQDQIRSIL GTLPEREQEV VKMRFGLEDG 

       430        440        450 
YSLTLEEVGL HFNVTRERIR QIESKALRRL 

« Hide

References

[1]Pan M.
Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: K48 EMBL AAC45105.1.
[2]"Sequence diversity of a gene encoding a putative primary sigma factor among Borrelia burgdorferi sensu lato strains."
Pan M.-J., Tsai C.-P., Yeh J.C.
FEMS Microbiol. Lett. 148:153-158(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: K48 EMBL AAC45105.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U68012 Genomic DNA. Translation: AAC45105.1.

3D structure databases

ProteinModelPortalP77826.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Family and domain databases

Gene3D1.10.10.10. 2 hits.
HAMAPMF_00963. Sigma70_RpoD_SigA.
InterProIPR014284. RNA_pol_sigma-70_dom.
IPR000943. RNA_pol_sigma70.
IPR007627. RNA_pol_sigma70_r2.
IPR007624. RNA_pol_sigma70_r3.
IPR007630. RNA_pol_sigma70_r4.
IPR013325. RNA_pol_sigma_r2.
IPR013324. RNA_pol_sigma_r3_r4.
IPR012760. RNA_pol_sigma_RpoD_C.
IPR028630. Sigma70_RpoD.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF04542. Sigma70_r2. 1 hit.
PF04539. Sigma70_r3. 1 hit.
PF04545. Sigma70_r4. 1 hit.
[Graphical view]
PRINTSPR00046. SIGMA70FCT.
SUPFAMSSF88659. SSF88659. 2 hits.
SSF88946. SSF88946. 1 hit.
TIGRFAMsTIGR02393. RpoD_Cterm. 1 hit.
TIGR02937. sigma70-ECF. 1 hit.
PROSITEPS00715. SIGMA70_1. 1 hit.
PS00716. SIGMA70_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameP77826_BORGR
AccessionPrimary (citable) accession number: P77826
Entry history
Integrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: February 19, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)