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Protein
Submitted name:

Primary sigma factor

Gene

rpoD

Organism
Borreliella garinii (Borrelia garinii)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.SAAS annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-bindingSAAS annotation, Sigma factorSAAS annotation
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Submitted name:
Primary sigma factorImported
Gene namesi
Name:rpoDImported
OrganismiBorreliella garinii (Borrelia garinii)Imported
Taxonomic identifieri29519 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella

Structurei

3D structure databases

ProteinModelPortaliP77826
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini255 – 268RNA_pol_sigma70InterPro annotationAdd BLAST14
Domaini424 – 450RNA_pol_sigma70InterPro annotationAdd BLAST27

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili175 – 195Sequence analysisAdd BLAST21

Sequence similaritiesi

Belongs to the sigma-70 factor family.SAAS annotation

Keywords - Domaini

Coiled coilSequence analysis

Family and domain databases

Gene3Di1.10.10.10, 2 hits
HAMAPiMF_00963 Sigma70_RpoD_SigA, 1 hit
InterProiView protein in InterPro
IPR014284 RNA_pol_sigma-70_dom
IPR000943 RNA_pol_sigma70
IPR007627 RNA_pol_sigma70_r2
IPR007624 RNA_pol_sigma70_r3
IPR007630 RNA_pol_sigma70_r4
IPR013325 RNA_pol_sigma_r2
IPR013324 RNA_pol_sigma_r3/r4-like
IPR012760 RNA_pol_sigma_RpoD_C
IPR028630 Sigma70_RpoD
IPR036388 WH-like_DNA-bd_sf
PfamiView protein in Pfam
PF04542 Sigma70_r2, 1 hit
PF04539 Sigma70_r3, 1 hit
PF04545 Sigma70_r4, 1 hit
PRINTSiPR00046 SIGMA70FCT
SUPFAMiSSF88659 SSF88659, 2 hits
SSF88946 SSF88946, 1 hit
TIGRFAMsiTIGR02393 RpoD_Cterm, 1 hit
TIGR02937 sigma70-ECF, 1 hit
PROSITEiView protein in PROSITE
PS00715 SIGMA70_1, 1 hit
PS00716 SIGMA70_2, 1 hit

Sequencei

Sequence statusi: Fragment.

P77826-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
QMDSGESIIE NILKNEGLVI ENYYNLINTI YSRMEREEFF KREKDKDKES
60 70 80 90 100
NPDYYNKKKR IASFYKIPLK PIQDRLISYV DNKHRVYELG GDIFEKNLKS
110 120 130 140 150
ERLALKELLR NVPLYQDELR IFSDDYIDSA NKIKDLQRQQ RIILSRLKIE
160 170 180 190 200
KIRDLRVLGR DLTIAEKRIE IEKSLKLKED AIKEQITEAQ LAQKELERIE
210 220 230 240 250
MYYEYPMDKI ISMSEEIAKG KQMMQHAKDQ LIKANLRLVV SIAKKYANRG
260 270 280 290 300
LHFFDLVQEG NIGLIKAVEK FEYKRGFKFS TYATWWIRQA ITRSISDQAR
310 320 330 340 350
TIRVPVHMIE QINRLNRETR YLVQVLGKDP TDEELSDRLG WELKKVKTVK
360 370 380 390 400
SVSREPVSLE TPIGEEEDSV LSDFIEDKAI KNPANHTSFV VLQDQIRSIL
410 420 430 440 450
GTLPEREQEV VKMRFGLEDG YSLTLEEVGL HFNVTRERIR QIESKALRRL
Length:450
Mass (Da):53,109
Last modified:February 1, 1997 - v1
Checksum:i116292CAB8984F1B
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Non-terminal residuei1Imported1
Non-terminal residuei450Imported1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68012 Genomic DNA Translation: AAC45105.1

Similar proteinsi

Entry informationi

Entry nameiP77826_BORGR
AccessioniPrimary (citable) accession number: P77826
Entry historyiIntegrated into UniProtKB/TrEMBL: February 1, 1997
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 93 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

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