P77826 (P77826_BORGR) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
RNA polymerase sigma factor RuleBase RU000715

Gene names

Name:

rpoD EMBL AAC45105.1

Organism

Borrelia garinii EMBL AAC45105.1

Taxonomic identifier

29519 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Spirochaetes › Spirochaetia › Spirochaetales › Spirochaetaceae › Borrelia › Borrelia burgdorferi group

Protein attributes

Sequence length	450 AA.
Sequence status	Fragment.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released By similarity. RuleBase RU000715
Sequence similarities	Belongs to the sigma-70 factor family. RuleBase RU000715

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding SAAS SAAS007627 RuleBase RU000715
Molecular function	Sigma factor SAAS SAAS007627 RuleBase RU000715
Gene Ontology (GO)
Biological_process	DNA-dependent transcription, initiation Inferred from electronic annotation. Source: InterPro
Molecular_function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW sequence-specific DNA binding transcription factor activity Inferred from electronic annotation. Source: InterPro sigma factor activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Experimental info
	Non-terminal residue	1	1	EMBL AAC45105.1
	Non-terminal residue	450	1	EMBL AAC45105.1

Sequences

	Sequence		Length	Mass (Da)
	P77826 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: 116292CAB8984F1B	FASTA	450	53,109
	10 20 30 40 50 60 QMDSGESIIE NILKNEGLVI ENYYNLINTI YSRMEREEFF KREKDKDKES NPDYYNKKKR 70 80 90 100 110 120 IASFYKIPLK PIQDRLISYV DNKHRVYELG GDIFEKNLKS ERLALKELLR NVPLYQDELR 130 140 150 160 170 180 IFSDDYIDSA NKIKDLQRQQ RIILSRLKIE KIRDLRVLGR DLTIAEKRIE IEKSLKLKED 190 200 210 220 230 240 AIKEQITEAQ LAQKELERIE MYYEYPMDKI ISMSEEIAKG KQMMQHAKDQ LIKANLRLVV 250 260 270 280 290 300 SIAKKYANRG LHFFDLVQEG NIGLIKAVEK FEYKRGFKFS TYATWWIRQA ITRSISDQAR 310 320 330 340 350 360 TIRVPVHMIE QINRLNRETR YLVQVLGKDP TDEELSDRLG WELKKVKTVK SVSREPVSLE 370 380 390 400 410 420 TPIGEEEDSV LSDFIEDKAI KNPANHTSFV VLQDQIRSIL GTLPEREQEV VKMRFGLEDG 430 440 450 YSLTLEEVGL HFNVTRERIR QIESKALRRL

References

[1]	Pan M. Submitted (AUG-1996) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: K48 EMBL AAC45105.1.
[2]	"Sequence diversity of a gene encoding a putative primary sigma factor among Borrelia burgdorferi sensu lato strains." Pan M.-J., Tsai C.-P., Yeh J.C. FEMS Microbiol. Lett. 148:153-158(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: K48 EMBL AAC45105.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U68012 Genomic DNA. Translation: AAC45105.1.
3D structure databases
HSSP	HSSP built from PDB template 1IW7 based on UniProtKB Q9WX78.
ProteinModelPortal	P77826.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Family and domain databases
Gene3D	1.10.10.10. 2 hits.
InterPro	IPR014284. RNA_pol_sigma-70_dom. IPR000943. RNA_pol_sigma70. IPR007627. RNA_pol_sigma70_r2. IPR007624. RNA_pol_sigma70_r3. IPR007630. RNA_pol_sigma70_r4. IPR013325. RNA_pol_sigma_r2. IPR013324. RNA_pol_sigma_r3_r4. IPR012760. RNA_pol_sigma_RpoD_C. IPR011991. WHTH_DNA-bd_dom. [Graphical view]
Pfam	PF04542. Sigma70_r2. 1 hit. PF04539. Sigma70_r3. 1 hit. PF04545. Sigma70_r4. 1 hit. [Graphical view]
PRINTS	PR00046. SIGMA70FCT.
SUPFAM	SSF88946. Sigma_r2. 1 hit. SSF88659. Sigma_r3_r4. 2 hits.
TIGRFAMs	TIGR02393. RpoD_Cterm. 1 hit. TIGR02937. sigma70-ECF. 1 hit.
PROSITE	PS00715. SIGMA70_1. 1 hit. PS00716. SIGMA70_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

P77826_BORGR

Accession

Primary (citable) accession number: P77826

Entry history

Integrated into UniProtKB/TrEMBL:	February 1, 1997
Last sequence update:	February 1, 1997
Last modified:	May 1, 2013
This is version 70 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)