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Protein

Protein YdgA

Gene

ydgA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • identical protein binding Source: IntAct
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6865-MONOMER.
ECOL316407:JW1606-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YdgA
Gene namesi
Name:ydgA
Ordered Locus Names:b1614, JW1606
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12457. ydgA.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1919Sequence analysisAdd
BLAST
Chaini20 – 502483Protein YdgAPRO_0000042627Add
BLAST

Proteomic databases

EPDiP77804.
PaxDbiP77804.
PRIDEiP77804.

Interactioni

Subunit structurei

Homodimer.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
itself2EBI-552466,EBI-552466

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

BioGridi4260256. 115 interactions.
DIPiDIP-11709N.
IntActiP77804. 11 interactions.
MINTiMINT-1239915.
STRINGi511145.b1614.

Structurei

3D structure databases

ProteinModelPortaliP77804.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YihF and H.influenzae HI_1236.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4106J39. Bacteria.
COG5339. LUCA.
HOGENOMiHOG000120874.
OMAiQYANGQV.
OrthoDBiEOG6CGC8W.

Family and domain databases

InterProiIPR010352. DUF945.
[Graphical view]
PfamiPF06097. DUF945. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKSLVAVGV IVALGVVWTG GAWYTGKKIE THLEDMVAQA NAQLKLTAPE
60 70 80 90 100
SNLEVSYQNY HRGVFSSQLQ LLVKPIAGKE NPWIKSGQSV IFNESVDHGP
110 120 130 140 150
FPLAQLKKLN LIPSMASIQT TLVNNEVSKP LFDMAKGETP FEINSRIGYS
160 170 180 190 200
GDSSSDISLK PLNYEQKDEK VAFSGGEFQL NADRDGKAIS LSGEAQSGRI
210 220 230 240 250
DAVNEYNQKV QLTFNNLKTD GSSTLASFGE RVGNQKLSLE KMTISVEGKE
260 270 280 290 300
LALLEGMEIS GKSDLVNDGK TINSQLDYSL NSLKVQNQDL GSGKLTLKVG
310 320 330 340 350
QIDGEAWHQF SQQYNAQTQA LLAQPEIANN PELYQEKVTE AFFSALPLML
360 370 380 390 400
KGDPVITIAP LSWKNSQGES ALNLSLFLKD PATTKEAPQT LAQEVDRSVK
410 420 430 440 450
SLDAKLTIPV DMATEFMTQV AKLEGYQEDQ AKKLAKQQVE GASAMGQMFR
460 470 480 490 500
LTTLQDNTIT TSLQYANGQI TLNGQKMSLE DFVGMFAMPA LNVPAVPAIP

QQ
Length:502
Mass (Da):54,689
Last modified:February 1, 1997 - v1
Checksum:iD061576FA5DBAC4C
GO

Sequence cautioni

The sequence AAA68926.1 differs from that shown. Reason: Frameshift at position 422. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti186 – 19813GKAIS…EAQSG → AKPSPFPGRRKVV (Ref. 1) CuratedAdd
BLAST
Sequence conflicti322 – 3232LA → SR in AAA68926 (Ref. 1) Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M14641 Genomic DNA. Translation: AAA68926.1. Frameshift.
U00096 Genomic DNA. Translation: AAC74686.1.
AP009048 Genomic DNA. Translation: BAA15362.1.
PIRiH64917.
RefSeqiNP_416131.1. NC_000913.3.
WP_001043339.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74686; AAC74686; b1614.
BAA15362; BAA15362; BAA15362.
GeneIDi946172.
KEGGiecj:JW1606.
eco:b1614.
PATRICi32118530. VBIEscCol129921_1685.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M14641 Genomic DNA. Translation: AAA68926.1. Frameshift.
U00096 Genomic DNA. Translation: AAC74686.1.
AP009048 Genomic DNA. Translation: BAA15362.1.
PIRiH64917.
RefSeqiNP_416131.1. NC_000913.3.
WP_001043339.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77804.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260256. 115 interactions.
DIPiDIP-11709N.
IntActiP77804. 11 interactions.
MINTiMINT-1239915.
STRINGi511145.b1614.

Proteomic databases

EPDiP77804.
PaxDbiP77804.
PRIDEiP77804.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74686; AAC74686; b1614.
BAA15362; BAA15362; BAA15362.
GeneIDi946172.
KEGGiecj:JW1606.
eco:b1614.
PATRICi32118530. VBIEscCol129921_1685.

Organism-specific databases

EchoBASEiEB2351.
EcoGeneiEG12457. ydgA.

Phylogenomic databases

eggNOGiENOG4106J39. Bacteria.
COG5339. LUCA.
HOGENOMiHOG000120874.
OMAiQYANGQV.
OrthoDBiEOG6CGC8W.

Enzyme and pathway databases

BioCyciEcoCyc:G6865-MONOMER.
ECOL316407:JW1606-MONOMER.

Miscellaneous databases

PROiP77804.

Family and domain databases

InterProiIPR010352. DUF945.
[Graphical view]
PfamiPF06097. DUF945. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The gus genes of Escherichia coli."
    Liang W.J., Wilson K.J., Jefferson R.A.
    Submitted (OCT-1994) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  5. Cited for: IDENTIFICATION BY MASS SPECTROMETRY, SUBUNIT, SUBCELLULAR LOCATION.
    Strain: BL21-DE3.

Entry informationi

Entry nameiYDGA_ECOLI
AccessioniPrimary (citable) accession number: P77804
Secondary accession number(s): Q47707
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 16, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.