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Protein

Protein YdgA

Gene

ydgA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • identical protein binding Source: IntAct

Enzyme and pathway databases

BioCyciEcoCyc:G6865-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YdgA
Gene namesi
Name:ydgA
Ordered Locus Names:b1614, JW1606
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG12457 ydgA

Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 19Sequence analysisAdd BLAST19
ChainiPRO_000004262720 – 502Protein YdgAAdd BLAST483

Proteomic databases

EPDiP77804
PaxDbiP77804
PRIDEiP77804

Interactioni

Subunit structurei

Homodimer.1 Publication

Binary interactionsi

WithEntry#Exp.IntActNotes
itself2EBI-552466,EBI-552466

GO - Molecular functioni

  • identical protein binding Source: IntAct

Protein-protein interaction databases

BioGridi4260256, 117 interactors
DIPiDIP-11709N
IntActiP77804, 11 interactors
STRINGi316385.ECDH10B_1747

Structurei

3D structure databases

ProteinModelPortaliP77804
SMRiP77804
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YihF and H.influenzae HI_1236.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4106J39 Bacteria
COG5339 LUCA
HOGENOMiHOG000120874
OMAiPAFDYEE

Family and domain databases

InterProiView protein in InterPro
IPR010352 DUF945
PfamiView protein in Pfam
PF06097 DUF945, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77804-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKSLVAVGV IVALGVVWTG GAWYTGKKIE THLEDMVAQA NAQLKLTAPE
60 70 80 90 100
SNLEVSYQNY HRGVFSSQLQ LLVKPIAGKE NPWIKSGQSV IFNESVDHGP
110 120 130 140 150
FPLAQLKKLN LIPSMASIQT TLVNNEVSKP LFDMAKGETP FEINSRIGYS
160 170 180 190 200
GDSSSDISLK PLNYEQKDEK VAFSGGEFQL NADRDGKAIS LSGEAQSGRI
210 220 230 240 250
DAVNEYNQKV QLTFNNLKTD GSSTLASFGE RVGNQKLSLE KMTISVEGKE
260 270 280 290 300
LALLEGMEIS GKSDLVNDGK TINSQLDYSL NSLKVQNQDL GSGKLTLKVG
310 320 330 340 350
QIDGEAWHQF SQQYNAQTQA LLAQPEIANN PELYQEKVTE AFFSALPLML
360 370 380 390 400
KGDPVITIAP LSWKNSQGES ALNLSLFLKD PATTKEAPQT LAQEVDRSVK
410 420 430 440 450
SLDAKLTIPV DMATEFMTQV AKLEGYQEDQ AKKLAKQQVE GASAMGQMFR
460 470 480 490 500
LTTLQDNTIT TSLQYANGQI TLNGQKMSLE DFVGMFAMPA LNVPAVPAIP

QQ
Length:502
Mass (Da):54,689
Last modified:February 1, 1997 - v1
Checksum:iD061576FA5DBAC4C
GO

Sequence cautioni

The sequence AAA68926 differs from that shown. Reason: Frameshift at position 422.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti186 – 198GKAIS…EAQSG → AKPSPFPGRRKVV (Ref. 1) CuratedAdd BLAST13
Sequence conflicti322 – 323LA → SR in AAA68926 (Ref. 1) Curated2

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M14641 Genomic DNA Translation: AAA68926.1 Frameshift.
U00096 Genomic DNA Translation: AAC74686.1
AP009048 Genomic DNA Translation: BAA15362.1
PIRiH64917
RefSeqiNP_416131.1, NC_000913.3
WP_001043339.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74686; AAC74686; b1614
BAA15362; BAA15362; BAA15362
GeneIDi946172
KEGGiecj:JW1606
eco:b1614
PATRICifig|511145.12.peg.1685

Similar proteinsi

Entry informationi

Entry nameiYDGA_ECOLI
AccessioniPrimary (citable) accession number: P77804
Secondary accession number(s): Q47707
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 129 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health