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Protein

Uncharacterized ABC transporter ATP-binding protein YdcT

Gene

ydcT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of a binding-protein-dependent transport system YdcSTUV. Probably responsible for energy coupling to the transport system.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi37 – 448ATPPROSITE-ProRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:YDCT-MONOMER.
ECOL316407:JW1436-MONOMER.
RETL1328306-WGS:GSTH-3735-MONOMER.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter ATP-binding protein YdcT
Gene namesi
Name:ydcT
Ordered Locus Names:b1441, JW1436
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13763. ydcT.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 337337Uncharacterized ABC transporter ATP-binding protein YdcTPRO_0000093162Add
BLAST

Proteomic databases

EPDiP77795.
PaxDbiP77795.
PRIDEiP77795.

Interactioni

Protein-protein interaction databases

BioGridi4260189. 81 interactions.
STRINGi511145.b1441.

Structurei

3D structure databases

ProteinModelPortaliP77795.
SMRiP77795. Positions 1-336.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini5 – 235231ABC transporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 1 ABC transporter domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C53. Bacteria.
COG3842. LUCA.
InParanoidiP77795.
KOiK02052.
OMAiSDRICIF.
PhylomeDBiP77795.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR008995. Mo/tungstate-bd_C_term_dom.
IPR027417. P-loop_NTPase.
IPR013611. Transp-assoc_OB_typ2.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08402. TOBE_2. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50331. SSF50331. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77795-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYAVEFDNV SRLYGDVRAV DGVSIAIKDG EFFSMLGPSG SGKTTCLRLI
60 70 80 90 100
AGFEQLSGGA ISIFGKPASN LPPWERDVNT VFQDYALFPH MSILDNVAYG
110 120 130 140 150
LMVKGVNKKQ RHAMAQEALE KVALGFVHQR KPSQLSGGQR QRVAIARALV
160 170 180 190 200
NEPRVLLLDE PLGALDLKLR EQMQLELKKL QQSLGITFIF VTHDQGEALS
210 220 230 240 250
MSDRVAVFNN GRIEQVDSPR DLYMRPRTPF VAGFVGTSNV FDGLMAEKLC
260 270 280 290 300
GMTGSFALRP EHIRLNTPGE LQANGTIQAV QYQGAATRFE LKLNGGEKLL
310 320 330
VSQANMTGEE LPATLTPGQQ VMVSWSRDVM VPLVEER
Length:337
Mass (Da):37,041
Last modified:February 1, 1997 - v1
Checksum:iFAA179089645F114
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74523.1.
AP009048 Genomic DNA. Translation: BAA15070.1.
PIRiD64896.
RefSeqiNP_415958.1. NC_000913.3.
WP_000220396.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74523; AAC74523; b1441.
BAA15070; BAA15070; BAA15070.
GeneIDi946007.
KEGGiecj:JW1436.
eco:b1441.
PATRICi32118172. VBIEscCol129921_1506.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74523.1.
AP009048 Genomic DNA. Translation: BAA15070.1.
PIRiD64896.
RefSeqiNP_415958.1. NC_000913.3.
WP_000220396.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77795.
SMRiP77795. Positions 1-336.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260189. 81 interactions.
STRINGi511145.b1441.

Protein family/group databases

TCDBi3.A.1.11.9. the atp-binding cassette (abc) superfamily.

Proteomic databases

EPDiP77795.
PaxDbiP77795.
PRIDEiP77795.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74523; AAC74523; b1441.
BAA15070; BAA15070; BAA15070.
GeneIDi946007.
KEGGiecj:JW1436.
eco:b1441.
PATRICi32118172. VBIEscCol129921_1506.

Organism-specific databases

EchoBASEiEB3526.
EcoGeneiEG13763. ydcT.

Phylogenomic databases

eggNOGiENOG4105C53. Bacteria.
COG3842. LUCA.
InParanoidiP77795.
KOiK02052.
OMAiSDRICIF.
PhylomeDBiP77795.

Enzyme and pathway databases

BioCyciEcoCyc:YDCT-MONOMER.
ECOL316407:JW1436-MONOMER.
RETL1328306-WGS:GSTH-3735-MONOMER.

Miscellaneous databases

PROiP77795.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR008995. Mo/tungstate-bd_C_term_dom.
IPR027417. P-loop_NTPase.
IPR013611. Transp-assoc_OB_typ2.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08402. TOBE_2. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50331. SSF50331. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDCT_ECOLI
AccessioniPrimary (citable) accession number: P77795
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 118 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.