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Protein

Putative uncharacterized protein YbfO

Gene

ybfO

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6376-MONOMER.
ECOL316407:JW0692-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized protein YbfO
Gene namesi
Name:ybfO
Ordered Locus Names:b0703, JW0692
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13661. ybfO.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 477477Putative uncharacterized protein YbfOPRO_0000168698Add
BLAST

Proteomic databases

PaxDbiP77779.

Interactioni

Protein-protein interaction databases

BioGridi4261604. 126 interactions.
DIPiDIP-11386N.
IntActiP77779. 11 interactions.
STRINGi511145.b3593.

Structurei

3D structure databases

ProteinModelPortaliP77779.
SMRiP77779. Positions 224-253.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RHS family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000009379.
PhylomeDBiP77779.

Family and domain databases

InterProiIPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
[Graphical view]
PfamiPF03527. RHS. 1 hit.
PF05593. RHS_repeat. 1 hit.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.

Sequencei

Sequence statusi: Complete.

P77779-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MWPDNRIARD AHYLYRYDRH GRLTEKTDLI PEGVIRTDDE RTHRYHYDSQ
60 70 80 90 100
HRLVHYTRTQ YAEPLVESRY LYDPLGRRVA KRVWRRERDL TGWMSLSRKP
110 120 130 140 150
QVTWYGWDGD RLTTIQNDRT RIQTIYQPGS FTPLIRVETA TGELAKTQRR
160 170 180 190 200
SLADTLQQSG GEDGGSVVFP PVLVQMLDRL ESEILADRVS EESRRWLASC
210 220 230 240 250
GLTVEQMQNQ MDPVYTPARK IHLYHCDHRG LPLALVSTEG ATEWCAEYDE
260 270 280 290 300
WGNLLNEENP HQLQQLIRLP GQQYDEESGL YYNRHRYYDP LQGRYITQDP
310 320 330 340 350
IGLKGGWNFY QYPLNPVQYI DSMGLASKYG HLNNGGYGAR PNKPPTPDPS
360 370 380 390 400
KLPDIAKQLR LPYPIDQASS APNVFKTFFR ALSPYDYTLY CRKWVKPNLT
410 420 430 440 450
CTPQDDSQYP GMDTKTASDY LPQTNWPTTQ LPPGYTCAEP YLFPDINKPD
460 470
GPATAGIDDL GEILAKMKQR TSRGIRK
Length:477
Mass (Da):55,232
Last modified:February 1, 1997 - v1
Checksum:i089D5D76807A6413
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA35361.1.
PIRiF64805.
RefSeqiWP_000267514.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAA35361; BAA35361; BAA35361.
KEGGiecj:JW0692.
PATRICi48660637. VBIEscCol107702_0701.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA35361.1.
PIRiF64805.
RefSeqiWP_000267514.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77779.
SMRiP77779. Positions 224-253.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261604. 126 interactions.
DIPiDIP-11386N.
IntActiP77779. 11 interactions.
STRINGi511145.b3593.

Proteomic databases

PaxDbiP77779.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA35361; BAA35361; BAA35361.
KEGGiecj:JW0692.
PATRICi48660637. VBIEscCol107702_0701.

Organism-specific databases

EcoGeneiEG13661. ybfO.

Phylogenomic databases

eggNOGiENOG4105CNA. Bacteria.
COG3209. LUCA.
HOGENOMiHOG000009379.
PhylomeDBiP77779.

Enzyme and pathway databases

BioCyciEcoCyc:G6376-MONOMER.
ECOL316407:JW0692-MONOMER.

Family and domain databases

InterProiIPR001826. RHS.
IPR022385. Rhs_assc_core.
IPR031325. RHS_repeat.
[Graphical view]
PfamiPF03527. RHS. 1 hit.
PF05593. RHS_repeat. 1 hit.
[Graphical view]
PRINTSiPR00394. RHSPROTEIN.
TIGRFAMsiTIGR03696. Rhs_assc_core. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBFO_ECOLI
AccessioniPrimary (citable) accession number: P77779
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.