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Protein

Epimerase family protein YfcH

Gene

yfcH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7196-MONOMER.
ECOL316407:JW2301-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Epimerase family protein YfcH
Gene namesi
Name:yfcH
Ordered Locus Names:b2304, JW2301
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14111. yfcH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 297297Epimerase family protein YfcHPRO_0000162404Add
BLAST

Proteomic databases

EPDiP77775.
PaxDbiP77775.
PRIDEiP77775.

Interactioni

Protein-protein interaction databases

BioGridi4260519. 71 interactions.
DIPiDIP-11981N.
IntActiP77775. 8 interactions.
STRINGi511145.b2304.

Structurei

3D structure databases

ProteinModelPortaliP77775.
SMRiP77775. Positions 1-295.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105ECP. Bacteria.
COG1090. LUCA.
HOGENOMiHOG000029190.
InParanoidiP77775.
KOiK07071.
OMAiNVWNSRI.
OrthoDBiEOG6NKR30.
PhylomeDBiP77775.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR013549. DUF1731.
IPR001509. Epimerase_deHydtase_N.
IPR016040. NAD(P)-bd_dom.
IPR010099. SDR39U1.
[Graphical view]
PANTHERiPTHR11092. PTHR11092. 1 hit.
PfamiPF08338. DUF1731. 1 hit.
PF01370. Epimerase. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01777. yfcH. 1 hit.

Sequencei

Sequence statusi: Complete.

P77775-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIVITGGTG LIGRHLIPRL LELGHQITVV TRNPQKASSV LGPRVTLWQG
60 70 80 90 100
LADQSNLNGV DAVINLAGEP IADKRWTHEQ KERLCQSRWN ITQKLVDLIN
110 120 130 140 150
ASDTPPSVLI SGSATGYYGD LGEVVVTEEE PPHNEFTHKL CARWEEIACR
160 170 180 190 200
AQSDKTRVCL LRTGVVLAPD GGILGKMLPP FRLGLGGPIG SGRQYLAWIH
210 220 230 240 250
IDDMVNGILW LLDNELRGPF NMVSPYPVRN EQFAHALGHA LHRPAILRVP
260 270 280 290
ATAIRLLMGE SSVLVLGGQR ALPKRLEEAG FAFRWYDLEE ALADVVR
Length:297
Mass (Da):32,699
Last modified:February 1, 1997 - v1
Checksum:iC7418CCFC54B674B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75364.1.
AP009048 Genomic DNA. Translation: BAA16141.1.
PIRiF65002.
RefSeqiNP_416807.1. NC_000913.3.
WP_001028341.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75364; AAC75364; b2304.
BAA16141; BAA16141; BAA16141.
GeneIDi946784.
KEGGiecj:JW2301.
eco:b2304.
PATRICi32119979. VBIEscCol129921_2399.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75364.1.
AP009048 Genomic DNA. Translation: BAA16141.1.
PIRiF65002.
RefSeqiNP_416807.1. NC_000913.3.
WP_001028341.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77775.
SMRiP77775. Positions 1-295.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260519. 71 interactions.
DIPiDIP-11981N.
IntActiP77775. 8 interactions.
STRINGi511145.b2304.

Proteomic databases

EPDiP77775.
PaxDbiP77775.
PRIDEiP77775.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75364; AAC75364; b2304.
BAA16141; BAA16141; BAA16141.
GeneIDi946784.
KEGGiecj:JW2301.
eco:b2304.
PATRICi32119979. VBIEscCol129921_2399.

Organism-specific databases

EchoBASEiEB3864.
EcoGeneiEG14111. yfcH.

Phylogenomic databases

eggNOGiENOG4105ECP. Bacteria.
COG1090. LUCA.
HOGENOMiHOG000029190.
InParanoidiP77775.
KOiK07071.
OMAiNVWNSRI.
OrthoDBiEOG6NKR30.
PhylomeDBiP77775.

Enzyme and pathway databases

BioCyciEcoCyc:G7196-MONOMER.
ECOL316407:JW2301-MONOMER.

Miscellaneous databases

PROiP77775.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR013549. DUF1731.
IPR001509. Epimerase_deHydtase_N.
IPR016040. NAD(P)-bd_dom.
IPR010099. SDR39U1.
[Graphical view]
PANTHERiPTHR11092. PTHR11092. 1 hit.
PfamiPF08338. DUF1731. 1 hit.
PF01370. Epimerase. 1 hit.
[Graphical view]
SUPFAMiSSF51735. SSF51735. 1 hit.
TIGRFAMsiTIGR01777. yfcH. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYFCH_ECOLI
AccessioniPrimary (citable) accession number: P77775
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: February 1, 1997
Last modified: April 13, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.