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Protein

Uncharacterized protein YdiJ

Gene

ydiJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Protein has several cofactor binding sites:

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

4Fe-4S, FAD, Flavoprotein, Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6913-MONOMER.
ECOL316407:JW1677-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdiJCurated
Gene namesi
Name:ydiJ
Ordered Locus Names:b1687, JW1677
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13969. ydiJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10181018Uncharacterized protein YdiJPRO_0000168994Add
BLAST

Proteomic databases

PaxDbiP77748.
PRIDEiP77748.

Interactioni

Protein-protein interaction databases

BioGridi4259458. 17 interactions.
DIPiDIP-11751N.
IntActiP77748. 2 interactions.
STRINGi511145.b1687.

Structurei

3D structure databases

ProteinModelPortaliP77748.
SMRiP77748. Positions 41-539.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini48 – 281234FAD-binding PCMH-typePROSITE-ProRule annotationAdd
BLAST
Domaini662 – 695344Fe-4S ferredoxin-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 4Fe-4S ferredoxin-type domain.PROSITE-ProRule annotation
Contains 1 FAD-binding PCMH-type domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105CQB. Bacteria.
COG0247. LUCA.
COG0277. LUCA.
HOGENOMiHOG000243746.
InParanoidiP77748.
OMAiFKPNGKP.
PhylomeDBiP77748.

Family and domain databases

Gene3Di3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR016164. FAD-linked_Oxase-like_C.
IPR004113. FAD-linked_oxidase_C.
IPR009051. Helical_ferredxn.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PfamiPF02913. FAD-oxidase_C. 1 hit.
PF01565. FAD_binding_4. 1 hit.
PF13183. Fer4_8. 1 hit.
[Graphical view]
SUPFAMiSSF46548. SSF46548. 2 hits.
SSF55103. SSF55103. 1 hit.
SSF56176. SSF56176. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
PS51387. FAD_PCMH. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77748-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPQISQAPG VVQLVLNFLQ ELEQQGFTGD TATSYADRLT MSTDNSIYQL
60 70 80 90 100
LPDAVVFPRS TADVALIARL AAQERYSSLI FTPRGGGTGT NGQALNQGII
110 120 130 140 150
VDMSRHMNRI IEINPEEGWV RVEAGVIKDQ LNQYLKPFGY FFAPELSTSN
160 170 180 190 200
RATLGGMINT DASGQGSLVY GKTSDHVLGV RAVLLGGDIL DTQPLPVELA
210 220 230 240 250
ETLGKSNTTI GRIYNTVYQR CRQQRQLIID NFPKLNRFLT GYDLRHVFND
260 270 280 290 300
EMTEFDLTRI LTGSEGTLAF ITEARLDITR LPKVRRLVNV KYDSFDSALR
310 320 330 340 350
NAPFMVEARA LSVETVDSKV LNLAREDIVW HSVSELITDV PDQEMLGLNI
360 370 380 390 400
VEFAGDDEAL IDERVNALCA RLDELIASHQ AGVIGWQVCR ELAGVERIYA
410 420 430 440 450
MRKKAVGLLG NAKGAAKPIP FAEDTCVPPE HLADYIAEFR ALLDSHGLSY
460 470 480 490 500
GMFGHVDAGV LHVRPALDMC DPQQEILMKQ ISDDVVALTA KYGGLLWGEH
510 520 530 540 550
GKGFRAEYSP AFFGEELFAE LRKVKAAFDP HNRLNPGKIC PPEGLDAPMM
560 570 580 590 600
KVDAVKRGTF DRQIPIAVRQ QWRGAMECNG NGLCFNFDAR SPMCPSMKIT
610 620 630 640 650
QNRIHSPKGR ATLVREWLRL LADRGVDPLK LEQELPESGV SLRTLIARTR
660 670 680 690 700
NSWHANKGEY DFSHEVKEAM SGCLACKACS TQCPIKIDVP EFRSRFLQLY
710 720 730 740 750
HTRYLRPLRD HLVATVESYA PLMARAPKTF NFFINQPLVR KLSEKHIGMV
760 770 780 790 800
DLPLLSVPSL QQQMVGHRSA NMTLEQLESL NAEQKARTVL VVQDPFTSYY
810 820 830 840 850
DAQVVADFVR LVEKLGFQPV LLPFSPNGKA QHIKGFLNRF AKTAKKTADF
860 870 880 890 900
LNRMAKLGMP MVGVDPALVL CYRDEYKLAL GEERGEFNVL LANEWLASAL
910 920 930 940 950
ESQPVATVSG ESWYFFGHCT EVTALPGAPA QWAAIFARFG AKLENVSVGC
960 970 980 990 1000
CGMAGTYGHE AKNHENSLGI YELSWHQAMQ RLPRNRCLAT GYSCRSQVKR
1010
VEGTGVRHPV QALLEIIK
Length:1,018
Mass (Da):113,248
Last modified:February 1, 1997 - v1
Checksum:iFA93940B0DC8C703
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74757.1.
AP009048 Genomic DNA. Translation: BAA15451.1.
PIRiG64926.
RefSeqiNP_416202.1. NC_000913.3.
WP_000613008.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74757; AAC74757; b1687.
BAA15451; BAA15451; BAA15451.
GeneIDi946189.
KEGGiecj:JW1677.
eco:b1687.
PATRICi32118680. VBIEscCol129921_1758.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74757.1.
AP009048 Genomic DNA. Translation: BAA15451.1.
PIRiG64926.
RefSeqiNP_416202.1. NC_000913.3.
WP_000613008.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77748.
SMRiP77748. Positions 41-539.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259458. 17 interactions.
DIPiDIP-11751N.
IntActiP77748. 2 interactions.
STRINGi511145.b1687.

Proteomic databases

PaxDbiP77748.
PRIDEiP77748.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74757; AAC74757; b1687.
BAA15451; BAA15451; BAA15451.
GeneIDi946189.
KEGGiecj:JW1677.
eco:b1687.
PATRICi32118680. VBIEscCol129921_1758.

Organism-specific databases

EchoBASEiEB3726.
EcoGeneiEG13969. ydiJ.

Phylogenomic databases

eggNOGiENOG4105CQB. Bacteria.
COG0247. LUCA.
COG0277. LUCA.
HOGENOMiHOG000243746.
InParanoidiP77748.
OMAiFKPNGKP.
PhylomeDBiP77748.

Enzyme and pathway databases

BioCyciEcoCyc:G6913-MONOMER.
ECOL316407:JW1677-MONOMER.

Miscellaneous databases

PROiP77748.

Family and domain databases

Gene3Di3.30.43.10. 1 hit.
3.30.465.10. 1 hit.
InterProiIPR017896. 4Fe4S_Fe-S-bd.
IPR017900. 4Fe4S_Fe_S_CS.
IPR016169. CO_DH_flavot_FAD-bd_sub2.
IPR016166. FAD-bd_2.
IPR016167. FAD-bd_2_sub1.
IPR016164. FAD-linked_Oxase-like_C.
IPR004113. FAD-linked_oxidase_C.
IPR009051. Helical_ferredxn.
IPR006094. Oxid_FAD_bind_N.
[Graphical view]
PfamiPF02913. FAD-oxidase_C. 1 hit.
PF01565. FAD_binding_4. 1 hit.
PF13183. Fer4_8. 1 hit.
[Graphical view]
SUPFAMiSSF46548. SSF46548. 2 hits.
SSF55103. SSF55103. 1 hit.
SSF56176. SSF56176. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
PS51379. 4FE4S_FER_2. 1 hit.
PS51387. FAD_PCMH. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDIJ_ECOLI
AccessioniPrimary (citable) accession number: P77748
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.