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Protein

Uncharacterized HTH-type transcriptional regulator YdcR

Gene

ydcR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding, Pyridoxal phosphate

Enzyme and pathway databases

BioCyciEcoCyc:G6750-MONOMER.
ECOL316407:JW1434-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdcR
Gene namesi
Name:ydcR
Ordered Locus Names:b1439, JW1434
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13761. ydcR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000507081 – 468Uncharacterized HTH-type transcriptional regulator YdcRAdd BLAST468

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei312N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDbiP77730.
PRIDEiP77730.

Interactioni

Protein-protein interaction databases

BioGridi4260188. 15 interactors.
DIPiDIP-28077N.
IntActiP77730. 3 interactors.
STRINGi511145.b1439.

Structurei

3D structure databases

ProteinModelPortaliP77730.
SMRiP77730.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 69HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated
Contains 1 HTH gntR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000133006.
InParanoidiP77730.
OMAiYFRFNTA.
PhylomeDBiP77730.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77730-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKYQQLAEQ LREQIASGIW QPGDRLPSLR DQVALSGMSF MTVSHAYQLL
60 70 80 90 100
ESQGYIIARP QSGYYVAPQA IKMPKAPVIP VTRDEAVDIN TYIFDMLQAS
110 120 130 140 150
RDPSVVPFAS AFPDPRLFPL QQLNRSLAQV SKTATAMSVI ENLPPGNAEL
160 170 180 190 200
RQAIARRYAL QGITISPDEI VITAGALEAL NLSLQAVTEP GDWVIVENPC
210 220 230 240 250
FYGALQALER LRLKALSVAT DVKEGIDLQA LELALQEYPV KACWLMTNSQ
260 270 280 290 300
NPLGFTLTPQ KKAQLVALLN QYNVTLIEDD VYSELYFGRE KPLPAKAWDR
310 320 330 340 350
HDGVLHCSSF SKCLVPGFRI GWVAAGKHAR KIQRLQLMST LSTSSPMQLA
360 370 380 390 400
LVDYLSTRRY DAHLRRLRRQ LAERKQRAWQ ALLRYLPAEV KIHHNDSGYF
410 420 430 440 450
LWLELPEPLD AGELSLAALT HHISIAPGKM FSTGENWSRF FRFNTAWQWG
460
EREEQAVKQL GKLIQERL
Length:468
Mass (Da):52,793
Last modified:February 1, 1997 - v1
Checksum:i435A09262FCF79C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74521.1.
AP009048 Genomic DNA. Translation: BAA15069.1.
PIRiB64896.
RefSeqiNP_415956.1. NC_000913.3.
WP_000760626.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74521; AAC74521; b1439.
BAA15069; BAA15069; BAA15069.
GeneIDi946004.
KEGGiecj:JW1434.
eco:b1439.
PATRICi32118168. VBIEscCol129921_1504.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74521.1.
AP009048 Genomic DNA. Translation: BAA15069.1.
PIRiB64896.
RefSeqiNP_415956.1. NC_000913.3.
WP_000760626.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77730.
SMRiP77730.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260188. 15 interactors.
DIPiDIP-28077N.
IntActiP77730. 3 interactors.
STRINGi511145.b1439.

Proteomic databases

PaxDbiP77730.
PRIDEiP77730.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74521; AAC74521; b1439.
BAA15069; BAA15069; BAA15069.
GeneIDi946004.
KEGGiecj:JW1434.
eco:b1439.
PATRICi32118168. VBIEscCol129921_1504.

Organism-specific databases

EchoBASEiEB3524.
EcoGeneiEG13761. ydcR.

Phylogenomic databases

eggNOGiENOG4105C1I. Bacteria.
COG1167. LUCA.
HOGENOMiHOG000133006.
InParanoidiP77730.
OMAiYFRFNTA.
PhylomeDBiP77730.

Enzyme and pathway databases

BioCyciEcoCyc:G6750-MONOMER.
ECOL316407:JW1434-MONOMER.

Miscellaneous databases

PROiP77730.

Family and domain databases

CDDicd07377. WHTH_GntR. 1 hit.
Gene3Di1.10.10.10. 1 hit.
3.40.640.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR000524. Tscrpt_reg_HTH_GntR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
PF00392. GntR. 1 hit.
[Graphical view]
SMARTiSM00345. HTH_GNTR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
SSF53383. SSF53383. 1 hit.
PROSITEiPS50949. HTH_GNTR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDCR_ECOLI
AccessioniPrimary (citable) accession number: P77730
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 130 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.