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Protein

Uncharacterized HTH-type transcriptional regulator YdcR

Gene

ydcR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionAminotransferase, DNA-binding, Transferase
Biological processTranscription, Transcription regulation
LigandPyridoxal phosphate

Enzyme and pathway databases

BioCyciEcoCyc:G6750-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdcR
Gene namesi
Name:ydcR
Ordered Locus Names:b1439, JW1434
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13761 ydcR

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000507081 – 468Uncharacterized HTH-type transcriptional regulator YdcRAdd BLAST468

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei312N6-(pyridoxal phosphate)lysineBy similarity1

Proteomic databases

PaxDbiP77730
PRIDEiP77730

Interactioni

Protein-protein interaction databases

BioGridi4260188, 15 interactors
DIPiDIP-28077N
IntActiP77730, 3 interactors
STRINGi316385.ECDH10B_1569

Structurei

3D structure databases

ProteinModelPortaliP77730
SMRiP77730
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 69HTH gntR-typePROSITE-ProRule annotationAdd BLAST69

Sequence similaritiesi

In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.Curated

Phylogenomic databases

eggNOGiENOG4105C1I Bacteria
COG1167 LUCA
HOGENOMiHOG000133006
InParanoidiP77730
OMAiMRLNFTY
PhylomeDBiP77730

Family and domain databases

CDDicd07377 WHTH_GntR, 1 hit
Gene3Di1.10.10.10, 1 hit
3.40.640.10, 1 hit
3.90.1150.10, 2 hits
InterProiView protein in InterPro
IPR004839 Aminotransferase_I/II
IPR015424 PyrdxlP-dep_Trfase
IPR015422 PyrdxlP-dep_Trfase_dom1
IPR015421 PyrdxlP-dep_Trfase_major
IPR000524 Tscrpt_reg_HTH_GntR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00155 Aminotran_1_2, 1 hit
PF00392 GntR, 1 hit
SMARTiView protein in SMART
SM00345 HTH_GNTR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF53383 SSF53383, 1 hit
PROSITEiView protein in PROSITE
PS50949 HTH_GNTR, 1 hit

Sequencei

Sequence statusi: Complete.

P77730-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKYQQLAEQ LREQIASGIW QPGDRLPSLR DQVALSGMSF MTVSHAYQLL
60 70 80 90 100
ESQGYIIARP QSGYYVAPQA IKMPKAPVIP VTRDEAVDIN TYIFDMLQAS
110 120 130 140 150
RDPSVVPFAS AFPDPRLFPL QQLNRSLAQV SKTATAMSVI ENLPPGNAEL
160 170 180 190 200
RQAIARRYAL QGITISPDEI VITAGALEAL NLSLQAVTEP GDWVIVENPC
210 220 230 240 250
FYGALQALER LRLKALSVAT DVKEGIDLQA LELALQEYPV KACWLMTNSQ
260 270 280 290 300
NPLGFTLTPQ KKAQLVALLN QYNVTLIEDD VYSELYFGRE KPLPAKAWDR
310 320 330 340 350
HDGVLHCSSF SKCLVPGFRI GWVAAGKHAR KIQRLQLMST LSTSSPMQLA
360 370 380 390 400
LVDYLSTRRY DAHLRRLRRQ LAERKQRAWQ ALLRYLPAEV KIHHNDSGYF
410 420 430 440 450
LWLELPEPLD AGELSLAALT HHISIAPGKM FSTGENWSRF FRFNTAWQWG
460
EREEQAVKQL GKLIQERL
Length:468
Mass (Da):52,793
Last modified:February 1, 1997 - v1
Checksum:i435A09262FCF79C9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74521.1
AP009048 Genomic DNA Translation: BAA15069.1
PIRiB64896
RefSeqiNP_415956.1, NC_000913.3
WP_000760626.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74521; AAC74521; b1439
BAA15069; BAA15069; BAA15069
GeneIDi946004
KEGGiecj:JW1434
eco:b1439
PATRICifig|1411691.4.peg.829

Similar proteinsi

Entry informationi

Entry nameiYDCR_ECOLI
AccessioniPrimary (citable) accession number: P77730
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 138 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health