Reviewed, UniProtKB/Swiss-Prot P77721 (YDJF_ECOLI)

Names and origin

Protein names

Recommended name:
    Uncharacterized HTH-type transcriptional regulator ydjF

Gene names

Name:	ydjF
Ordered Locus Names:	b1770, JW1759

Organism

Escherichia coli (strain K12) [Complete proteome] [HAMAP]

Taxonomic identifier

83333 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Escherichia

Protein attributes

Sequence length	252 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

General annotation (Comments)

Sequence similarities

Contains 1 HTH deoR-type DNA-binding domain.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	DNA-binding
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription Inferred from electronic annotation. Source: UniProtKB-KW
Cellular component	intracellular Inferred from electronic annotation. Source: InterPro
Molecular function	protein binding Inferred from physical interaction. Source: IntAct transcription factor activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Binary interactions

With	Entry	#Exp.	IntAct	Notes
lpdA	P0A9P0	1	EBI-545197,EBI-542856

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 252	252	Uncharacterized HTH-type transcriptional regulator ydjF		PRO_0000050272
Regions
	Domain	3 – 58	56	HTH deoR-type
	DNA binding	20 – 39	20	H-T-H motif Potential

Sequences

	Sequence		Length	Mass (Da)
	P77721-1 [UniParc]. Last modified February 1, 1997. Version 1. Checksum: 7D76EBB55B1B270C	FASTA	252	28,261
	10 20 30 40 50 60 MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT RTYGGAVLNT 70 80 90 100 110 120 AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD SSSTVMELLK LLQDRSGLTL 130 140 150 160 170 180 LTNSAEAIHV LAQSEIKVVS TGGELNKNTL SLQGRITKEI IRRYHVDIMV MSCKGLDINS 190 200 210 220 230 240 GALDSNEAEA EIKKTMIRQA TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI 250 AFCKDNNIQL VW

References

[1]	"A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map." Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T., Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K. , Nakade S., Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y., Wada C., Yamamoto Y., Horiuchi T. DNA Res. 3:363-377(1996) [PubMed: 9097039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]	"The complete genome sequence of Escherichia coli K-12." Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y. Science 277:1453-1474(1997) [PubMed: 9278503] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / MG1655 / ATCC 47076.
[3]	"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110." Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T. Mol. Syst. Biol. 2:E1-E5(2006) [PubMed: 16738553] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00096 Genomic DNA. Translation: AAC74840.1. AP009048 Genomic DNA. Translation: BAA15561.1.
PIR	B64937.
RefSeq	AP_002389.1. NP_416284.1.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
DIP	DIP:11769N.
IntAct	P77721. 17 interactions.
Genome annotation databases
GeneID	946272.
GenomeReviews	Gene locus JW1759 in contig AP009048_GR. Gene locus b1770 in contig U00096_GR.
KEGG	ecj:JW1759. eco:b1770.
Organism-specific databases
EchoBASE	EB3255.
EcoGene	EG13482. ydjF.
CMR	Search...
Phylogenomic databases
HOGENOM	P77721.
OMA	P77721. VLTENIH.
Enzyme and pathway databases
BioCyc	EcoCyc:G6957-MON.
Family and domain databases
InterPro	IPR014036. HTH_DeoR. IPR001034. HTH_DeoR_N. IPR018356. Tscrpt_reg_HTH_DeoR_CS. [Graphical view]
Pfam	PF00455. DeoR. 1 hit. PF08220. HTH_DeoR. 1 hit. [Graphical view]
PRINTS	PR00037. HTHLACR.
SMART	SM00420. HTH_DEOR. 1 hit. [Graphical view]
PROSITE	PS00894. HTH_DEOR_1. 1 hit. PS51000. HTH_DEOR_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

YDJF_ECOLI

Accession

Primary (citable) accession number: P77721

Entry history

Integrated into UniProtKB/Swiss-Prot:	July 15, 1998
Last sequence update:	February 1, 1997
Last modified:	June 16, 2009
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)