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Protein

Uncharacterized HTH-type transcriptional regulator YdjF

Gene

ydjF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi20 – 3920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6957-MONOMER.
ECOL316407:JW1759-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdjF
Gene namesi
Name:ydjF
Ordered Locus Names:b1770, JW1759
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13482. ydjF.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 252252Uncharacterized HTH-type transcriptional regulator YdjFPRO_0000050272Add
BLAST

Proteomic databases

PaxDbiP77721.
PRIDEiP77721.

Interactioni

Protein-protein interaction databases

BioGridi4261174. 9 interactions.
DIPiDIP-11769N.
IntActiP77721. 17 interactions.
STRINGi511145.b1770.

Structurei

3D structure databases

ProteinModelPortaliP77721.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini3 – 5856HTH deoR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH deoR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4105E98. Bacteria.
COG1349. LUCA.
HOGENOMiHOG000224683.
InParanoidiP77721.
OMAiAGSTTME.
PhylomeDBiP77721.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
[Graphical view]
PRINTSiPR00037. HTHLACR.
SMARTiSM00420. HTH_DEOR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77721-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAKDRIQAI KQMVANDKKV TVSNLSGIFQ VTEETIRRDL EKLEDEGFLT
60 70 80 90 100
RTYGGAVLNT AMLTENIHFY KRASSFYEEK QLIARKALPF IDNKTTMAAD
110 120 130 140 150
SSSTVMELLK LLQDRSGLTL LTNSAEAIHV LAQSEIKVVS TGGELNKNTL
160 170 180 190 200
SLQGRITKEI IRRYHVDIMV MSCKGLDINS GALDSNEAEA EIKKTMIRQA
210 220 230 240 250
TEVALLVDHS KFDRKAFVQL ADFSHINYII TDKSPGAEWI AFCKDNNIQL

VW
Length:252
Mass (Da):28,261
Last modified:February 1, 1997 - v1
Checksum:i7D76EBB55B1B270C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74840.1.
AP009048 Genomic DNA. Translation: BAA15561.1.
PIRiB64937.
RefSeqiNP_416284.1. NC_000913.3.
WP_000719096.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74840; AAC74840; b1770.
BAA15561; BAA15561; BAA15561.
GeneIDi946272.
KEGGiecj:JW1759.
eco:b1770.
PATRICi32118851. VBIEscCol129921_1843.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74840.1.
AP009048 Genomic DNA. Translation: BAA15561.1.
PIRiB64937.
RefSeqiNP_416284.1. NC_000913.3.
WP_000719096.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77721.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261174. 9 interactions.
DIPiDIP-11769N.
IntActiP77721. 17 interactions.
STRINGi511145.b1770.

Proteomic databases

PaxDbiP77721.
PRIDEiP77721.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74840; AAC74840; b1770.
BAA15561; BAA15561; BAA15561.
GeneIDi946272.
KEGGiecj:JW1759.
eco:b1770.
PATRICi32118851. VBIEscCol129921_1843.

Organism-specific databases

EchoBASEiEB3255.
EcoGeneiEG13482. ydjF.

Phylogenomic databases

eggNOGiENOG4105E98. Bacteria.
COG1349. LUCA.
HOGENOMiHOG000224683.
InParanoidiP77721.
OMAiAGSTTME.
PhylomeDBiP77721.

Enzyme and pathway databases

BioCyciEcoCyc:G6957-MONOMER.
ECOL316407:JW1759-MONOMER.

Miscellaneous databases

PROiP77721.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR014036. DeoR_C.
IPR001034. DeoR_HTH.
IPR018356. Tscrpt_reg_HTH_DeoR_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00455. DeoRC. 1 hit.
PF08220. HTH_DeoR. 1 hit.
[Graphical view]
PRINTSiPR00037. HTHLACR.
SMARTiSM00420. HTH_DEOR. 1 hit.
[Graphical view]
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiPS00894. HTH_DEOR_1. 1 hit.
PS51000. HTH_DEOR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDJF_ECOLI
AccessioniPrimary (citable) accession number: P77721
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.