Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane ABC transporter permease protein YcjP

Gene

ycjP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YcjNOP. Probably responsible for the translocation of the substrate across the membrane.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YCJP-MONOMER.
ECOL316407:JW1305-MONOMER.
RETL1328306-WGS:GSTH-4343-MONOMER.
RETL1328306-WGS:GSTH-5947-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane ABC transporter permease protein YcjP
Gene namesi
Name:ycjP
Ordered Locus Names:b1312, JW1305
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13913. ycjP.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1010CytoplasmicSequence analysis
Transmembranei11 – 3121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini32 – 5322PeriplasmicSequence analysisAdd
BLAST
Transmembranei54 – 7421HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini75 – 773CytoplasmicSequence analysis
Transmembranei78 – 9821HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini99 – 11719PeriplasmicSequence analysisAdd
BLAST
Transmembranei118 – 13821HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini139 – 1402CytoplasmicSequence analysis
Transmembranei141 – 16121HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini162 – 18928PeriplasmicSequence analysisAdd
BLAST
Transmembranei190 – 21021HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini211 – 2144CytoplasmicSequence analysis
Transmembranei215 – 23521HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini236 – 2427PeriplasmicSequence analysis
Transmembranei243 – 26321HelicalPROSITE-ProRule annotationAdd
BLAST
Topological domaini264 – 28017CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 280280Inner membrane ABC transporter permease protein YcjPPRO_0000060241Add
BLAST

Proteomic databases

PaxDbiP77716.

Interactioni

Protein-protein interaction databases

BioGridi4263196. 9 interactions.
STRINGi511145.b1312.

Structurei

3D structure databases

ProteinModelPortaliP77716.
SMRiP77716. Positions 20-280.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini74 – 265192ABC transmembrane type-1PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 ABC transmembrane type-1 domain.PROSITE-ProRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105DRW. Bacteria.
COG0395. LUCA.
HOGENOMiHOG000220526.
InParanoidiP77716.
KOiK02026.
OMAiEKAAQMD.
OrthoDBiEOG60PHFH.
PhylomeDBiP77716.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77716-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MATNKRTLSR IGFYCGLALF LIITLFPFFV MLMTSFKGAK EAISLHPTLL
60 70 80 90 100
PQQWTLEHYV DIFNPMIFPF VDYFRNSLVV SVVSSVVAVF LGILGAYALS
110 120 130 140 150
RLRFKGRMTI NASFYTVYMF SGILLVVPLF KIITALGIYD TEMALIITMV
160 170 180 190 200
TQTLPTAVFM LKSYFDTIPD EIEEAAMMDG LNRLQIIFRI TVPLAMSGLI
210 220 230 240 250
SVFVYCFMVA WNDYLFASIF LSSASNFTLP VGLNALFSTP DYIWGRMMAA
260 270 280
SLVTALPVVI MYALSERFIK SGLTAGGVKG
Length:280
Mass (Da):31,250
Last modified:February 1, 1997 - v1
Checksum:iFD2E91F516CB9967
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74394.1.
AP009048 Genomic DNA. Translation: BAA14888.1.
PIRiC64880.
RefSeqiNP_415828.1. NC_000913.3.
WP_000224659.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74394; AAC74394; b1312.
BAA14888; BAA14888; BAA14888.
GeneIDi945892.
KEGGiecj:JW1305.
eco:b1312.
PATRICi32117896. VBIEscCol129921_1368.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74394.1.
AP009048 Genomic DNA. Translation: BAA14888.1.
PIRiC64880.
RefSeqiNP_415828.1. NC_000913.3.
WP_000224659.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77716.
SMRiP77716. Positions 20-280.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263196. 9 interactions.
STRINGi511145.b1312.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP77716.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74394; AAC74394; b1312.
BAA14888; BAA14888; BAA14888.
GeneIDi945892.
KEGGiecj:JW1305.
eco:b1312.
PATRICi32117896. VBIEscCol129921_1368.

Organism-specific databases

EchoBASEiEB3672.
EcoGeneiEG13913. ycjP.

Phylogenomic databases

eggNOGiENOG4105DRW. Bacteria.
COG0395. LUCA.
HOGENOMiHOG000220526.
InParanoidiP77716.
KOiK02026.
OMAiEKAAQMD.
OrthoDBiEOG60PHFH.
PhylomeDBiP77716.

Enzyme and pathway databases

BioCyciEcoCyc:YCJP-MONOMER.
ECOL316407:JW1305-MONOMER.
RETL1328306-WGS:GSTH-4343-MONOMER.
RETL1328306-WGS:GSTH-5947-MONOMER.

Miscellaneous databases

PROiP77716.

Family and domain databases

Gene3Di1.10.3720.10. 1 hit.
InterProiIPR000515. MetI-like.
[Graphical view]
PfamiPF00528. BPD_transp_1. 1 hit.
[Graphical view]
SUPFAMiSSF161098. SSF161098. 1 hit.
PROSITEiPS50928. ABC_TM1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYCJP_ECOLI
AccessioniPrimary (citable) accession number: P77716
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 112 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.