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Protein

Ferredoxin-like protein YdiT

Gene

ydiT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be a 3Fe-4S cluster-containing protein. Probably participates in a redox process with YdiQ, YdiR and YdiS.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Iron, Iron-sulfur, Metal-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6923-MONOMER.
ECOL316407:JW1690-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ferredoxin-like protein YdiT
Gene namesi
Name:ydiT
Ordered Locus Names:b1700, JW1690
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13979. ydiT.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 9797Ferredoxin-like protein YdiTPRO_0000159218Add
BLAST

Proteomic databases

PaxDbiP77714.

Interactioni

Protein-protein interaction databases

BioGridi4260295. 15 interactions.
STRINGi511145.b1700.

Structurei

3D structure databases

ProteinModelPortaliP77714.
SMRiP77714. Positions 34-85.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG41090P5. Bacteria.
COG2440. LUCA.
HOGENOMiHOG000018925.
InParanoidiP77714.
OMAiRFDSAGC.
PhylomeDBiP77714.

Family and domain databases

InterProiIPR017900. 4Fe4S_Fe_S_CS.
IPR012206. Fd_FixX.
[Graphical view]
PIRSFiPIRSF036548. Fdx_FixX. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77714-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSQNATVNVD IKLGVNKFHV DEGHPHIILA ENPDINEFHK LMKACPAGLY
60 70 80 90
KQDDAGNIHF DSAGCLECGT CRVLCGNTIL EQWQYPAGTF GIDFRYG
Length:97
Mass (Da):10,724
Last modified:February 1, 1997 - v1
Checksum:iD5093A630073020A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74770.1.
AP009048 Genomic DNA. Translation: BAA15469.1.
PIRiD64928.
RefSeqiNP_416215.1. NC_000913.3.
WP_000081081.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74770; AAC74770; b1700.
BAA15469; BAA15469; BAA15469.
GeneIDi946214.
KEGGiecj:JW1690.
eco:b1700.
PATRICi32118706. VBIEscCol129921_1771.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74770.1.
AP009048 Genomic DNA. Translation: BAA15469.1.
PIRiD64928.
RefSeqiNP_416215.1. NC_000913.3.
WP_000081081.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77714.
SMRiP77714. Positions 34-85.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260295. 15 interactions.
STRINGi511145.b1700.

Proteomic databases

PaxDbiP77714.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74770; AAC74770; b1700.
BAA15469; BAA15469; BAA15469.
GeneIDi946214.
KEGGiecj:JW1690.
eco:b1700.
PATRICi32118706. VBIEscCol129921_1771.

Organism-specific databases

EchoBASEiEB3736.
EcoGeneiEG13979. ydiT.

Phylogenomic databases

eggNOGiENOG41090P5. Bacteria.
COG2440. LUCA.
HOGENOMiHOG000018925.
InParanoidiP77714.
OMAiRFDSAGC.
PhylomeDBiP77714.

Enzyme and pathway databases

BioCyciEcoCyc:G6923-MONOMER.
ECOL316407:JW1690-MONOMER.

Miscellaneous databases

PROiP77714.

Family and domain databases

InterProiIPR017900. 4Fe4S_Fe_S_CS.
IPR012206. Fd_FixX.
[Graphical view]
PIRSFiPIRSF036548. Fdx_FixX. 1 hit.
PROSITEiPS00198. 4FE4S_FER_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDIT_ECOLI
AccessioniPrimary (citable) accession number: P77714
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.