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Protein

Uncharacterized HTH-type transcriptional regulator YahB

Gene

yahB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi22 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST21

GO - Molecular functioni

GO - Biological processi

  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6181-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YahB
Gene namesi
Name:yahB
Ordered Locus Names:b0316, JW0308
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13586 yahB

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057751 – 310Uncharacterized HTH-type transcriptional regulator YahBAdd BLAST310

Proteomic databases

PaxDbiP77700
PRIDEiP77700

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
bglGP119894EBI-545731,EBI-545674

Protein-protein interaction databases

BioGridi4262804, 9 interactors
DIPiDIP-11254N
IntActiP77700, 6 interactors
STRINGi316385.ECDH10B_0303

Structurei

3D structure databases

ProteinModelPortaliP77700
SMRiP77700
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 62HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG4108NUU Bacteria
ENOG410XQF9 LUCA
HOGENOMiHOG000181312
InParanoidiP77700
OMAiYFYRKAT
PhylomeDBiP77700

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P77700-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNSIFTEENL LAFTTAARFG SFSKAAEELG LTTSAISYTI KRMETGLDVV
60 70 80 90 100
LFTRSTRSIE LTESGRYFFR KATDLLNDFY AIKRRIDTIS QGIEARVRIC
110 120 130 140 150
INQLLYTPKH TARLLQVLKK QFPTCQITVT TEVYNGVWDA IINNQANIAI
160 170 180 190 200
GAPDTLLDGG GIDYTEIGAI RWAFAIAPDH PLAFVPEPIA ESQLRLYPNI
210 220 230 240 250
MVEDTAHTIN KKVGWLLHGQ ESILVPDFNT KCQCQILGEG IGFLPDYMVR
260 270 280 290 300
EAMTQSLLVT RQIHNPRQDS RMLLATQHSA TGQVTQWIKK QFAPNGILTG
310
IYQDLLHREN
Length:310
Mass (Da):34,866
Last modified:February 1, 1997 - v1
Checksum:iA3EB895E7F69D60C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U73857 Genomic DNA Translation: AAB18042.1
U00096 Genomic DNA Translation: AAC73419.1
AP009048 Genomic DNA Translation: BAE76099.1
PIRiD64758
RefSeqiNP_414850.1, NC_000913.3
WP_001084394.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73419; AAC73419; b0316
BAE76099; BAE76099; BAE76099
GeneIDi945278
KEGGiecj:JW0308
eco:b0316
PATRICifig|1411691.4.peg.1961

Similar proteinsi

Entry informationi

Entry nameiYAHB_ECOLI
AccessioniPrimary (citable) accession number: P77700
Secondary accession number(s): Q2MCA7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 130 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health