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Protein

Uncharacterized protein YbcK

Gene

ybcK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei11O-(5'-phospho-DNA)-serine intermediatePROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi175 – 290RecombinasePROSITE-ProRule annotationAdd BLAST116

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

DNA recombination

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6300-MONOMER.
ECOL316407:JW0532-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcK
Gene namesi
Name:ybcK
Ordered Locus Names:b0544, JW0532
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13627. ybcK.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686511 – 508Uncharacterized protein YbcKAdd BLAST508

Proteomic databases

PaxDbiP77698.
PRIDEiP77698.

Interactioni

Protein-protein interaction databases

BioGridi4261008. 46 interactors.
DIPiDIP-11332N.
IntActiP77698. 2 interactors.
STRINGi511145.b0544.

Structurei

3D structure databases

ProteinModelPortaliP77698.
SMRiP77698.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 163Resolvase/invertase-type recombinase catalyticPROSITE-ProRule annotationAdd BLAST161

Sequence similaritiesi

Contains 1 recombinase DNA-binding domain.PROSITE-ProRule annotation
Contains 1 resolvase/invertase-type recombinase catalytic domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4107TII. Bacteria.
COG1961. LUCA.
HOGENOMiHOG000054896.
OMAiDRPAIPN.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR011109. DNA_bind_recombinase_dom.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view]
PfamiPF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS51737. RECOMBINASE_DNA_BIND. 1 hit.
PS51736. RECOMBINASES_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77698-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKAIAYMRF SSPGQMSGDS LNRQRRLIAE WLKVNSDYYL DTITYEDLGL
60 70 80 90 100
SAFKGKHAQS GAFSEFLDAI EHGYILPGTT LLVESLDRLS REKVGEAIER
110 120 130 140 150
LKLILNHGID VITLCDNTVY NIDSLNEPYS LIKAILIAQR ANEESEIKSS
160 170 180 190 200
RVKLSWKKKR QDALESGTIM TASCPRWLSL DDKRTAFVPD PDRVKTIELI
210 220 230 240 250
FKLRMERRSL NAIAKYLNDH AVKNFSGKES AWGPSVIEKL LANKALIGIC
260 270 280 290 300
VPSYRARGKG ISEIAGYYPR VISDDLFYAV QEIRLAPFGI SNSSKNPMLI
310 320 330 340 350
NLLRTVMKCE ACGNTMIVHA VSGSLHGYYV CPMRRLHRCD RPSIKRDLVD
360 370 380 390 400
YNIINELLFN CSKIQPVENK KDANETLELK IIELQMKINN LIVALSVAPE
410 420 430 440 450
VTAIAEKIRL LDKELRRASV SLKTLKSKGV NSFSDFYAID LTSKNGRELC
460 470 480 490 500
RTLAYKTFEK IIINTDNKTC DIYFMNGIVF KHYPLMKVIS AQQAISALKY

MVDGEIYF
Length:508
Mass (Da):57,527
Last modified:February 1, 1997 - v1
Checksum:iF85C07DBF45105CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40741.1.
U00096 Genomic DNA. Translation: AAC73645.1.
AP009048 Genomic DNA. Translation: BAE76319.1.
PIRiF64786.
RefSeqiNP_415076.1. NC_000913.3.
WP_000709082.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73645; AAC73645; b0544.
BAE76319; BAE76319; BAE76319.
GeneIDi945166.
KEGGiecj:JW0532.
eco:b0544.
PATRICi32116252. VBIEscCol129921_0566.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40741.1.
U00096 Genomic DNA. Translation: AAC73645.1.
AP009048 Genomic DNA. Translation: BAE76319.1.
PIRiF64786.
RefSeqiNP_415076.1. NC_000913.3.
WP_000709082.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77698.
SMRiP77698.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261008. 46 interactors.
DIPiDIP-11332N.
IntActiP77698. 2 interactors.
STRINGi511145.b0544.

Proteomic databases

PaxDbiP77698.
PRIDEiP77698.

Protocols and materials databases

DNASUi945166.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73645; AAC73645; b0544.
BAE76319; BAE76319; BAE76319.
GeneIDi945166.
KEGGiecj:JW0532.
eco:b0544.
PATRICi32116252. VBIEscCol129921_0566.

Organism-specific databases

EchoBASEiEB3392.
EcoGeneiEG13627. ybcK.

Phylogenomic databases

eggNOGiENOG4107TII. Bacteria.
COG1961. LUCA.
HOGENOMiHOG000054896.
OMAiDRPAIPN.

Enzyme and pathway databases

BioCyciEcoCyc:G6300-MONOMER.
ECOL316407:JW0532-MONOMER.

Miscellaneous databases

PROiP77698.

Family and domain databases

Gene3Di3.40.50.1390. 1 hit.
InterProiIPR011109. DNA_bind_recombinase_dom.
IPR006119. Resolv_N.
IPR025827. Zn_ribbon_recom_dom.
[Graphical view]
PfamiPF07508. Recombinase. 1 hit.
PF00239. Resolvase. 1 hit.
PF13408. Zn_ribbon_recom. 1 hit.
[Graphical view]
SMARTiSM00857. Resolvase. 1 hit.
[Graphical view]
SUPFAMiSSF53041. SSF53041. 1 hit.
PROSITEiPS51737. RECOMBINASE_DNA_BIND. 1 hit.
PS51736. RECOMBINASES_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYBCK_ECOLI
AccessioniPrimary (citable) accession number: P77698
Secondary accession number(s): Q2MBN7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 102 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.