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Protein

Uncharacterized protein YbcK

Gene

ybcK

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei11O-(5'-phospho-DNA)-serine intermediatePROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi175 – 290RecombinasePROSITE-ProRule annotationAdd BLAST116

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding
Biological processDNA recombination

Enzyme and pathway databases

BioCyciEcoCyc:G6300-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcK
Gene namesi
Name:ybcK
Ordered Locus Names:b0544, JW0532
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi

Organism-specific databases

EcoGeneiEG13627 ybcK

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001686511 – 508Uncharacterized protein YbcKAdd BLAST508

Proteomic databases

PaxDbiP77698
PRIDEiP77698

Interactioni

Protein-protein interaction databases

BioGridi4261008, 46 interactors
DIPiDIP-11332N
IntActiP77698, 2 interactors
STRINGi316385.ECDH10B_0500

Structurei

3D structure databases

ProteinModelPortaliP77698
SMRiP77698
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 163Resolvase/invertase-type recombinase catalyticPROSITE-ProRule annotationAdd BLAST161

Phylogenomic databases

eggNOGiENOG4107TII Bacteria
COG1961 LUCA
HOGENOMiHOG000054896
OMAiPAIPNYY

Family and domain databases

Gene3Di1.10.10.2600, 1 hit
InterProiView protein in InterPro
IPR038109 DNA_bind_recomb_sf
IPR011109 DNA_bind_recombinase_dom
IPR006119 Resolv_N
IPR036162 Resolvase-like_N_sf
IPR025827 Zn_ribbon_recom_dom
PfamiView protein in Pfam
PF07508 Recombinase, 1 hit
PF00239 Resolvase, 1 hit
PF13408 Zn_ribbon_recom, 1 hit
SMARTiView protein in SMART
SM00857 Resolvase, 1 hit
SUPFAMiSSF53041 SSF53041, 1 hit
PROSITEiView protein in PROSITE
PS51737 RECOMBINASE_DNA_BIND, 1 hit
PS51736 RECOMBINASES_3, 1 hit

Sequencei

Sequence statusi: Complete.

P77698-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKAIAYMRF SSPGQMSGDS LNRQRRLIAE WLKVNSDYYL DTITYEDLGL
60 70 80 90 100
SAFKGKHAQS GAFSEFLDAI EHGYILPGTT LLVESLDRLS REKVGEAIER
110 120 130 140 150
LKLILNHGID VITLCDNTVY NIDSLNEPYS LIKAILIAQR ANEESEIKSS
160 170 180 190 200
RVKLSWKKKR QDALESGTIM TASCPRWLSL DDKRTAFVPD PDRVKTIELI
210 220 230 240 250
FKLRMERRSL NAIAKYLNDH AVKNFSGKES AWGPSVIEKL LANKALIGIC
260 270 280 290 300
VPSYRARGKG ISEIAGYYPR VISDDLFYAV QEIRLAPFGI SNSSKNPMLI
310 320 330 340 350
NLLRTVMKCE ACGNTMIVHA VSGSLHGYYV CPMRRLHRCD RPSIKRDLVD
360 370 380 390 400
YNIINELLFN CSKIQPVENK KDANETLELK IIELQMKINN LIVALSVAPE
410 420 430 440 450
VTAIAEKIRL LDKELRRASV SLKTLKSKGV NSFSDFYAID LTSKNGRELC
460 470 480 490 500
RTLAYKTFEK IIINTDNKTC DIYFMNGIVF KHYPLMKVIS AQQAISALKY

MVDGEIYF
Length:508
Mass (Da):57,527
Last modified:February 1, 1997 - v1
Checksum:iF85C07DBF45105CD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA Translation: AAB40741.1
U00096 Genomic DNA Translation: AAC73645.1
AP009048 Genomic DNA Translation: BAE76319.1
PIRiF64786
RefSeqiNP_415076.1, NC_000913.3
WP_000709082.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73645; AAC73645; b0544
BAE76319; BAE76319; BAE76319
GeneIDi945166
KEGGiecj:JW0532
eco:b0544
PATRICifig|1411691.4.peg.1733

Entry informationi

Entry nameiYBCK_ECOLI
AccessioniPrimary (citable) accession number: P77698
Secondary accession number(s): Q2MBN7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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