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Protein

UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase

Gene

arnB

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Catalyzes the conversion of UDP-4-keto-arabinose (UDP-Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides.

Catalytic activityi

UDP-4-amino-4-deoxy-beta-L-arabinose + 2-oxoglutarate = UDP-beta-L-threo-pentapyranos-4-ulose + L-glutamate.1 Publication

Cofactori

Pathwayi: UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis

This protein is involved in step 2 of the subpathway that synthesizes UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate.1 Publication
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. Bifunctional polymyxin resistance protein ArnA (arnA)
  2. UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (arnB)
  3. Bifunctional polymyxin resistance protein ArnA (arnA)
This subpathway is part of the pathway UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis, which is itself part of Nucleotide-sugar biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes UDP-4-deoxy-4-formamido-beta-L-arabinose from UDP-alpha-D-glucuronate, the pathway UDP-4-deoxy-4-formamido-beta-L-arabinose biosynthesis and in Nucleotide-sugar biosynthesis.

Pathwayi: lipopolysaccharide biosynthesis

This protein is involved in the pathway lipopolysaccharide biosynthesis, which is part of Bacterial outer membrane biogenesis.1 Publication
View all proteins of this organism that are known to be involved in the pathway lipopolysaccharide biosynthesis and in Bacterial outer membrane biogenesis.

GO - Molecular functioni

  • pyridoxal phosphate binding Source: EcoCyc
  • transaminase activity Source: EcoCyc
  • undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase activity Source: UniProtKB-EC

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Aminotransferase, Transferase

Keywords - Biological processi

Antibiotic resistance, Lipid A biosynthesis, Lipid biosynthesis, Lipid metabolism, Lipopolysaccharide biosynthesis

Keywords - Ligandi

Pyridoxal phosphate

Enzyme and pathway databases

BioCyciEcoCyc:G7166-MONOMER.
ECOL316407:JW5372-MONOMER.
MetaCyc:G7166-MONOMER.
BRENDAi2.6.1.87. 2026.
UniPathwayiUPA00030.
UPA00032; UER00493.

Names & Taxonomyi

Protein namesi
Recommended name:
UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase (EC:2.6.1.87)
Alternative name(s):
Polymyxin resistance protein PmrH
UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase
Short name:
UDP-Ara4O aminotransferase
UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Gene namesi
Name:arnB
Synonyms:pmrH, yfbE
Ordered Locus Names:b2253, JW5372
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14089. arnB.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: EcoCyc
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 379379UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferasePRO_0000110018Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei182 – 1821N6-(pyridoxal phosphate)lysineBy similarity

Proteomic databases

EPDiP77690.
PaxDbiP77690.
PRIDEiP77690.

Expressioni

Inductioni

Induced by BasR.By similarity

Interactioni

Subunit structurei

Homodimer.By similarity

Protein-protein interaction databases

BioGridi4259180. 233 interactions.
STRINGi511145.b2253.

Structurei

3D structure databases

ProteinModelPortaliP77690.
SMRiP77690. Positions 3-378.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the DegT/DnrJ/EryC1 family. ArnB subfamily.Curated

Phylogenomic databases

eggNOGiENOG4105CF4. Bacteria.
COG0399. LUCA.
HOGENOMiHOG000230163.
InParanoidiP77690.
KOiK07806.
OMAiSEWNSAR.
PhylomeDBiP77690.

Family and domain databases

CDDicd00616. AHBA_syn. 1 hit.
Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
HAMAPiMF_01167. ArnB_transfer. 1 hit.
InterProiIPR022850. ArnB_NH2Trfase.
IPR000653. DegT/StrS_aminotransferase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF01041. DegT_DnrJ_EryC1. 1 hit.
[Graphical view]
PIRSFiPIRSF000390. PLP_StrS. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Complete.

P77690-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEFLPFSRP AMGVEELAAV KEVLESGWIT TGPKNQALEQ AFCQLTGNQH
60 70 80 90 100
AIAVSSATAG MHITLMALKI GKGDEVITPS LTWVSTLNMI SLLGATPVMV
110 120 130 140 150
DVDRDTLMVT PEAIESAITP RTKAIIPVHY AGAPADIDAI RAIGERYGIA
160 170 180 190 200
VIEDAAHAVG TYYKGRHIGA KGTAIFSFHA IKNITCAEGG LIVTDNENLA
210 220 230 240 250
RQLRMLKFHG LGVDAYDRQT WGRAPQAEVL TPGYKYNLTD INAAIALTQL
260 270 280 290 300
VKLEHLNTRR REIAQQYQQA LAALPFQPLS LPAWPHVHAW HLFIIRVDEQ
310 320 330 340 350
RCGISRDALM EALKERGIGT GLHFRAAHTQ KYYRERFPTL SLPNTEWNSE
360 370
RICSLPLFPD MTTADADHVI TALQQLAGQ
Length:379
Mass (Da):41,650
Last modified:April 27, 2001 - v2
Checksum:i3BB025C28508837E
GO

Sequence cautioni

The sequence AAM92146 differs from that shown. Reason: Erroneous initiation. Curated
The sequence BAA16076 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF527386 Genomic DNA. Translation: AAM92146.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75313.3.
AP009048 Genomic DNA. Translation: BAA16076.2. Different initiation.
PIRiC64996.
RefSeqiNP_416756.5. NC_000913.3.
WP_001295286.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75313; AAC75313; b2253.
BAA16076; BAA16076; BAA16076.
GeneIDi947375.
KEGGiecj:JW5372.
eco:b2253.
PATRICi32119871. VBIEscCol129921_2345.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF527386 Genomic DNA. Translation: AAM92146.1. Different initiation.
U00096 Genomic DNA. Translation: AAC75313.3.
AP009048 Genomic DNA. Translation: BAA16076.2. Different initiation.
PIRiC64996.
RefSeqiNP_416756.5. NC_000913.3.
WP_001295286.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77690.
SMRiP77690. Positions 3-378.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259180. 233 interactions.
STRINGi511145.b2253.

Proteomic databases

EPDiP77690.
PaxDbiP77690.
PRIDEiP77690.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75313; AAC75313; b2253.
BAA16076; BAA16076; BAA16076.
GeneIDi947375.
KEGGiecj:JW5372.
eco:b2253.
PATRICi32119871. VBIEscCol129921_2345.

Organism-specific databases

EchoBASEiEB3842.
EcoGeneiEG14089. arnB.

Phylogenomic databases

eggNOGiENOG4105CF4. Bacteria.
COG0399. LUCA.
HOGENOMiHOG000230163.
InParanoidiP77690.
KOiK07806.
OMAiSEWNSAR.
PhylomeDBiP77690.

Enzyme and pathway databases

UniPathwayiUPA00030.
UPA00032; UER00493.
BioCyciEcoCyc:G7166-MONOMER.
ECOL316407:JW5372-MONOMER.
MetaCyc:G7166-MONOMER.
BRENDAi2.6.1.87. 2026.

Miscellaneous databases

PROiP77690.

Family and domain databases

CDDicd00616. AHBA_syn. 1 hit.
Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
HAMAPiMF_01167. ArnB_transfer. 1 hit.
InterProiIPR022850. ArnB_NH2Trfase.
IPR000653. DegT/StrS_aminotransferase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF01041. DegT_DnrJ_EryC1. 1 hit.
[Graphical view]
PIRSFiPIRSF000390. PLP_StrS. 1 hit.
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiARNB_ECOLI
AccessioniPrimary (citable) accession number: P77690
Secondary accession number(s): Q8KRQ3
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: April 27, 2001
Last modified: September 7, 2016
This is version 125 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.