Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YbcM

Gene

ybcM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi181 – 200H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • regulation of transcription, DNA-templated Source: GO_Central
  • response to antibiotic Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6302-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbcM
Gene namesi
Name:ybcM
Ordered Locus Names:b0546, JW0534
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13629 ybcM

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001946141 – 265Uncharacterized HTH-type transcriptional regulator YbcMAdd BLAST265

Proteomic databases

PaxDbiP77634
PRIDEiP77634

Interactioni

Protein-protein interaction databases

BioGridi4261567, 13 interactors
IntActiP77634, 11 interactors
STRINGi316385.ECDH10B_0502

Structurei

3D structure databases

ProteinModelPortaliP77634
SMRiP77634
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108UQN Bacteria
ENOG4111KTA LUCA
HOGENOMiHOG000281126
InParanoidiP77634
OMAiRFSQRFK
PhylomeDBiP77634

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
PfamiView protein in Pfam
PF12833 HTH_18, 1 hit
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77634-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLARGKTNLK IEEIRMHKHH EIHRVKPLMP ALCRIRQGKK VINWETHTLT
60 70 80 90 100
VDNNQIILFP CGYEFYIENY PEAGLYLAEM LYLPIDLIES FQKLYTVTDQ
110 120 130 140 150
IRNKTSFFLP QNPELIYCWE QLKTSVSRGF STKIQEHLAM GVLLSLGVNH
160 170 180 190 200
VNHLLLSYSK QSLISRCYNL LLSEPGTKWT ANKVARYLYI SVSTLHRRLA
210 220 230 240 250
SEGVSFQSIL DDVRLNNALS AIQTTVKPIS EIARENGYKC PSRFTERFHN
260
RFNITPREIR KASRE
Length:265
Mass (Da):30,841
Last modified:February 1, 1997 - v1
Checksum:i9500BB4411514073
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA Translation: AAB40743.1
U00096 Genomic DNA Translation: AAC73647.1
AP009048 Genomic DNA Translation: BAE76321.1
PIRiH64786
RefSeqiNP_415078.1, NC_000913.3
WP_000881075.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73647; AAC73647; b0546
BAE76321; BAE76321; BAE76321
GeneIDi945163
KEGGiecj:JW0534
eco:b0546
PATRICifig|1411691.4.peg.1731

Similar proteinsi

Entry informationi

Entry nameiYBCM_ECOLI
AccessioniPrimary (citable) accession number: P77634
Secondary accession number(s): Q2MBN5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health