Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YbcM

Gene

ybcM

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi181 – 20020H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • regulation of transcription, DNA-templated Source: GO_Central
  • response to antibiotic Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6302-MONOMER.
ECOL316407:JW0534-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YbcM
Gene namesi
Name:ybcM
Ordered Locus Names:b0546, JW0534
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13629. ybcM.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 265265Uncharacterized HTH-type transcriptional regulator YbcMPRO_0000194614Add
BLAST

Proteomic databases

PaxDbiP77634.

Interactioni

Protein-protein interaction databases

BioGridi4261567. 13 interactions.
IntActiP77634. 11 interactions.
STRINGi511145.b0546.

Structurei

3D structure databases

ProteinModelPortaliP77634.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH araC/xylS-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108UQN. Bacteria.
ENOG4111KTA. LUCA.
HOGENOMiHOG000281126.
InParanoidiP77634.
OMAiVTTRRLC.
OrthoDBiEOG62ZHT7.
PhylomeDBiP77634.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77634-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLARGKTNLK IEEIRMHKHH EIHRVKPLMP ALCRIRQGKK VINWETHTLT
60 70 80 90 100
VDNNQIILFP CGYEFYIENY PEAGLYLAEM LYLPIDLIES FQKLYTVTDQ
110 120 130 140 150
IRNKTSFFLP QNPELIYCWE QLKTSVSRGF STKIQEHLAM GVLLSLGVNH
160 170 180 190 200
VNHLLLSYSK QSLISRCYNL LLSEPGTKWT ANKVARYLYI SVSTLHRRLA
210 220 230 240 250
SEGVSFQSIL DDVRLNNALS AIQTTVKPIS EIARENGYKC PSRFTERFHN
260
RFNITPREIR KASRE
Length:265
Mass (Da):30,841
Last modified:February 1, 1997 - v1
Checksum:i9500BB4411514073
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40743.1.
U00096 Genomic DNA. Translation: AAC73647.1.
AP009048 Genomic DNA. Translation: BAE76321.1.
PIRiH64786.
RefSeqiNP_415078.1. NC_000913.3.
WP_000881075.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73647; AAC73647; b0546.
BAE76321; BAE76321; BAE76321.
GeneIDi945163.
KEGGiecj:JW0534.
eco:b0546.
PATRICi32116256. VBIEscCol129921_0568.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40743.1.
U00096 Genomic DNA. Translation: AAC73647.1.
AP009048 Genomic DNA. Translation: BAE76321.1.
PIRiH64786.
RefSeqiNP_415078.1. NC_000913.3.
WP_000881075.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77634.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261567. 13 interactions.
IntActiP77634. 11 interactions.
STRINGi511145.b0546.

Proteomic databases

PaxDbiP77634.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73647; AAC73647; b0546.
BAE76321; BAE76321; BAE76321.
GeneIDi945163.
KEGGiecj:JW0534.
eco:b0546.
PATRICi32116256. VBIEscCol129921_0568.

Organism-specific databases

EchoBASEiEB3394.
EcoGeneiEG13629. ybcM.

Phylogenomic databases

eggNOGiENOG4108UQN. Bacteria.
ENOG4111KTA. LUCA.
HOGENOMiHOG000281126.
InParanoidiP77634.
OMAiVTTRRLC.
OrthoDBiEOG62ZHT7.
PhylomeDBiP77634.

Enzyme and pathway databases

BioCyciEcoCyc:G6302-MONOMER.
ECOL316407:JW0534-MONOMER.

Miscellaneous databases

PROiP77634.

Family and domain databases

Gene3Di1.10.10.60. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
PROSITEiPS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBCM_ECOLI
AccessioniPrimary (citable) accession number: P77634
Secondary accession number(s): Q2MBN5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.