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Protein

Uncharacterized protein YbeR

Gene

ybeR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6352-MONOMER.
ECOL316407:JW0640-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbeR
Gene namesi
Name:ybeR
Ordered Locus Names:b0645, JW0640
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13648. ybeR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 235235Uncharacterized protein YbeRPRO_0000168682Add
BLAST

Proteomic databases

PaxDbiP77627.
PRIDEiP77627.

Interactioni

Protein-protein interaction databases

BioGridi4259906. 6 interactions.
DIPiDIP-11366N.
IntActiP77627. 6 interactions.
STRINGi511145.b0645.

Structurei

3D structure databases

ProteinModelPortaliP77627.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YbeU.Curated

Phylogenomic databases

eggNOGiENOG41069CF. Bacteria.
ENOG410XVCG. LUCA.
HOGENOMiHOG000009368.
InParanoidiP77627.
OMAiLQYFSAY.
OrthoDBiEOG6MPWSH.

Family and domain databases

InterProiIPR009677. DUF1266.
[Graphical view]
PfamiPF06889. DUF1266. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77627-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDMESQKILF ALSTPMEIRN ECCLPSHSSP KMYLGTCFFD LSSSWGIDDR
60 70 80 90 100
DDLLRTIHRM IDNGHAARLA GFYHRWFRYS PCEWRDYLAE LNEQGQAYAQ
110 120 130 140 150
FVASTAECCG EGGIKAWDYV RMGFLSRMGV LNNWLSEEES LWIQSRIHLR
160 170 180 190 200
ALRYYSNWRQ YFAGYTFGRQ YWQSPEDDHL PLLREFLARK EYDDSGNDMF
210 220 230
YQLFASDDAY YPTLSWQPLA YYSACPETLK DMSDL
Length:235
Mass (Da):27,736
Last modified:February 1, 1997 - v1
Checksum:iC1104C5AF5774D23
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40846.1.
U00096 Genomic DNA. Translation: AAC73746.1.
AP009048 Genomic DNA. Translation: BAA35292.1.
PIRiC64799.
RefSeqiNP_415178.1. NC_000913.3.
WP_000367023.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73746; AAC73746; b0645.
BAA35292; BAA35292; BAA35292.
GeneIDi945249.
KEGGiecj:JW0640.
eco:b0645.
PATRICi32116473. VBIEscCol129921_0676.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40846.1.
U00096 Genomic DNA. Translation: AAC73746.1.
AP009048 Genomic DNA. Translation: BAA35292.1.
PIRiC64799.
RefSeqiNP_415178.1. NC_000913.3.
WP_000367023.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77627.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259906. 6 interactions.
DIPiDIP-11366N.
IntActiP77627. 6 interactions.
STRINGi511145.b0645.

Proteomic databases

PaxDbiP77627.
PRIDEiP77627.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73746; AAC73746; b0645.
BAA35292; BAA35292; BAA35292.
GeneIDi945249.
KEGGiecj:JW0640.
eco:b0645.
PATRICi32116473. VBIEscCol129921_0676.

Organism-specific databases

EchoBASEiEB3412.
EcoGeneiEG13648. ybeR.

Phylogenomic databases

eggNOGiENOG41069CF. Bacteria.
ENOG410XVCG. LUCA.
HOGENOMiHOG000009368.
InParanoidiP77627.
OMAiLQYFSAY.
OrthoDBiEOG6MPWSH.

Enzyme and pathway databases

BioCyciEcoCyc:G6352-MONOMER.
ECOL316407:JW0640-MONOMER.

Miscellaneous databases

PROiP77627.

Family and domain databases

InterProiIPR009677. DUF1266.
[Graphical view]
PfamiPF06889. DUF1266. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBER_ECOLI
AccessioniPrimary (citable) accession number: P77627
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 99 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.