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Protein

Uncharacterized HTH-type transcriptional regulator YcjW

Gene

ycjW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi5 – 24H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6658-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YcjW
Gene namesi
Name:ycjW
Ordered Locus Names:b1320, JW1313
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13920. ycjW.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001080091 – 332Uncharacterized HTH-type transcriptional regulator YcjWAdd BLAST332

Proteomic databases

PaxDbiP77615.
PRIDEiP77615.

Interactioni

Protein-protein interaction databases

BioGridi4260147. 10 interactors.
DIPiDIP-11614N.
IntActiP77615. 4 interactors.
STRINGi316385.ECDH10B_1439.

Structurei

3D structure databases

ProteinModelPortaliP77615.
SMRiP77615.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 57HTH lacI-typePROSITE-ProRule annotationAdd BLAST57

Phylogenomic databases

eggNOGiENOG4105FKQ. Bacteria.
COG1609. LUCA.
HOGENOMiHOG000220180.
InParanoidiP77615.
PhylomeDBiP77615.

Family and domain databases

CDDicd01392. HTH_LacI. 1 hit.
Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR000843. HTH_LacI.
IPR010982. Lambda_DNA-bd_dom.
IPR001761. Peripla_BP/Lac1_sug-bd_dom.
IPR028082. Peripla_BP_I.
IPR011991. WHTH_DNA-bd_dom.
PfamiView protein in Pfam
PF00356. LacI. 1 hit.
PF00532. Peripla_BP_1. 1 hit.
PRINTSiPR00036. HTHLACI.
SMARTiView protein in SMART
SM00354. HTH_LACI. 1 hit.
SUPFAMiSSF47413. SSF47413. 1 hit.
SSF53822. SSF53822. 1 hit.
PROSITEiView protein in PROSITE
PS00356. HTH_LACI_1. 1 hit.
PS50932. HTH_LACI_2. 1 hit.

Sequencei

Sequence statusi: Complete.

P77615-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPTIYDIAR VAGVSKSTVS RVLNKQTNIS PEAREKVLRA IEELQYQPNK
60 70 80 90 100
LARALTSSGF DAIMVISTRS TKTTAGNPFF SEVLHAITAK AEEEGFDVIL
110 120 130 140 150
QTSHNPAEDL QKCESKIKQK MIKGIIMLSS PADESFFAQL DKYDIPVVVI
160 170 180 190 200
GKVEGQYAHV YSVDTDNFGD SIALTDALIE SGHQNIACLH APLDVHVSVD
210 220 230 240 250
RVNGYKQSLA AHNIAVRDEW IVDGGYTHET ALKAARQLLS QSPLPEAVFA
260 270 280 290 300
TDSLKLMSIY RAAAEKNIAI PQQLAVVGYS NETLSFILTP APGGIDVPTQ
310 320 330
ELGQQSCELL FRLISGKPSP QNITVATHMT LK
Length:332
Mass (Da):36,134
Last modified:February 1, 1997 - v1
Checksum:iF9779C862327F40D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74402.1.
AP009048 Genomic DNA. Translation: BAA14901.1.
PIRiC64881.
RefSeqiNP_415836.1. NC_000913.3.
WP_000075375.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74402; AAC74402; b1320.
BAA14901; BAA14901; BAA14901.
GeneIDi945875.
KEGGiecj:JW1313.
eco:b1320.
PATRICifig|1411691.4.peg.958.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiYCJW_ECOLI
AccessioniPrimary (citable) accession number: P77615
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: July 5, 2017
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene