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Protein

Uncharacterized HTH-type transcriptional regulator YcjW

Gene

ycjW

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi5 – 24H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoCyc
  • regulation of transcription, DNA-templated Source: UniProtKB-KW
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6658-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YcjW
Gene namesi
Name:ycjW
Ordered Locus Names:b1320, JW1313
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13920 ycjW

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001080091 – 332Uncharacterized HTH-type transcriptional regulator YcjWAdd BLAST332

Proteomic databases

PaxDbiP77615
PRIDEiP77615

Interactioni

Protein-protein interaction databases

BioGridi4260147, 10 interactors
DIPiDIP-11614N
IntActiP77615, 4 interactors
STRINGi316385.ECDH10B_1439

Structurei

3D structure databases

ProteinModelPortaliP77615
SMRiP77615
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 57HTH lacI-typePROSITE-ProRule annotationAdd BLAST57

Phylogenomic databases

eggNOGiENOG4105FKQ Bacteria
COG1609 LUCA
HOGENOMiHOG000220180
InParanoidiP77615
OMAiNEWSVIE
PhylomeDBiP77615

Family and domain databases

CDDicd01392 HTH_LacI, 1 hit
InterProiView protein in InterPro
IPR000843 HTH_LacI
IPR010982 Lambda_DNA-bd_dom_sf
IPR001761 Peripla_BP/Lac1_sug-bd_dom
IPR028082 Peripla_BP_I
PfamiView protein in Pfam
PF00356 LacI, 1 hit
PF00532 Peripla_BP_1, 1 hit
PRINTSiPR00036 HTHLACI
SMARTiView protein in SMART
SM00354 HTH_LACI, 1 hit
SUPFAMiSSF47413 SSF47413, 1 hit
SSF53822 SSF53822, 1 hit
PROSITEiView protein in PROSITE
PS00356 HTH_LACI_1, 1 hit
PS50932 HTH_LACI_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77615-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSPTIYDIAR VAGVSKSTVS RVLNKQTNIS PEAREKVLRA IEELQYQPNK
60 70 80 90 100
LARALTSSGF DAIMVISTRS TKTTAGNPFF SEVLHAITAK AEEEGFDVIL
110 120 130 140 150
QTSHNPAEDL QKCESKIKQK MIKGIIMLSS PADESFFAQL DKYDIPVVVI
160 170 180 190 200
GKVEGQYAHV YSVDTDNFGD SIALTDALIE SGHQNIACLH APLDVHVSVD
210 220 230 240 250
RVNGYKQSLA AHNIAVRDEW IVDGGYTHET ALKAARQLLS QSPLPEAVFA
260 270 280 290 300
TDSLKLMSIY RAAAEKNIAI PQQLAVVGYS NETLSFILTP APGGIDVPTQ
310 320 330
ELGQQSCELL FRLISGKPSP QNITVATHMT LK
Length:332
Mass (Da):36,134
Last modified:February 1, 1997 - v1
Checksum:iF9779C862327F40D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74402.1
AP009048 Genomic DNA Translation: BAA14901.1
PIRiC64881
RefSeqiNP_415836.1, NC_000913.3
WP_000075375.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74402; AAC74402; b1320
BAA14901; BAA14901; BAA14901
GeneIDi945875
KEGGiecj:JW1313
eco:b1320
PATRICifig|1411691.4.peg.958

Similar proteinsi

Entry informationi

Entry nameiYCJW_ECOLI
AccessioniPrimary (citable) accession number: P77615
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 132 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health