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Protein

Putative HTH-type transcriptional regulator YkgA

Gene

ykgA

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein uncertaini

Functioni

Caution

Could be the product of a pseudogene.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi35 – 54H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6170-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulator YkgA
Gene namesi
Name:ykgA
Ordered Locus Names:b0300, JW5037
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13381 ykgA

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001946121 – 239Putative HTH-type transcriptional regulator YkgAAdd BLAST239

Proteomic databases

PRIDEiP77601

Interactioni

Protein-protein interaction databases

BioGridi4259797, 12 interactors
STRINGi316385.ECDH10B_0289

Structurei

3D structure databases

ProteinModelPortaliP77601
SMRiP77601
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000117268
InParanoidiP77601
OMAiTSDSHNI
PhylomeDBiP77601

Family and domain databases

Gene3Di3.20.80.10, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
IPR011256 Reg_factor_effector_dom_sf
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
SSF55136 SSF55136, 1 hit
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77601-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRYDKELTEN EMIRQKILQQ LLEWIECNLE HPISIEDIAQ KSGYSRRNIQ
60 70 80 90 100
LLFRNFMHVP LGEYIRKRRL CRAAILVRLT AKSMLDIALS LHFDSQQSFS
110 120 130 140 150
REFKKLFGCS PREYRHRDYW DLANIFPSFL IRQQQKTECR LINFPETPIF
160 170 180 190 200
GNSFKYDIEV SNKSPDEEVK LRRHHLARCM KNFKTDIYFV STFEPSTKSV
210 220 230
DLLTVETFAG TVCEYADMPK EWTTTRGLYD PTHVIWTQA
Length:239
Mass (Da):28,475
Last modified:February 1, 1997 - v1
Checksum:i12C035E165A38522
GO

Sequence cautioni

The sequence BAE76085 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U73857 Genomic DNA Translation: AAB18028.1
U00096 Genomic DNA No translation available.
AP009048 Genomic DNA Translation: BAE76085.1 Different initiation.
PIRiD64756

Genome annotation databases

EnsemblBacteriaiBAE76085; BAE76085; BAE76085
KEGGiecj:JW5037

Similar proteinsi

Entry informationi

Entry nameiYKGA_ECOLI
AccessioniPrimary (citable) accession number: P77601
Secondary accession number(s): Q2MCC1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health