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Protein

Uncharacterized protein YbcV

Gene

ybcV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6313-MONOMER.
ECOL316407:JW5081-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbcV
Gene namesi
Name:ybcV
Ordered Locus Names:b0558, JW5081
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13638. ybcV.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 136136Uncharacterized protein YbcVPRO_0000168656Add
BLAST

Proteomic databases

PaxDbiP77598.

Interactioni

Protein-protein interaction databases

BioGridi4262823. 17 interactions.
DIPiDIP-11339N.
STRINGi511145.b0558.

Structurei

3D structure databases

ProteinModelPortaliP77598.
SMRiP77598. Positions 3-128.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

To E.coli YcgX and YdfO.Curated

Phylogenomic databases

eggNOGiCOG5562. LUCA.
HOGENOMiHOG000119635.
OMAiLIETSYN.
PhylomeDBiP77598.

Family and domain databases

Gene3Di3.30.1810.10. 1 hit.
InterProiIPR009833. DUF1398.
[Graphical view]
PfamiPF07166. DUF1398. 1 hit.
[Graphical view]
ProDomiPD021249. DUF1398. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF160419. SSF160419. 1 hit.

Sequencei

Sequence statusi: Complete.

P77598-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQVAIFKEI FDQVRKDLNC ELFYSELKRH NVSHYIYYLA TDNIHIVLEN
60 70 80 90 100
DNTVLIKGLK KVVNVKFSRN THLIETSYDR LKSREITFQQ YRENLAKAGV
110 120 130
FRWITNIHEH KRYYYTFDNS LLFTESIQNT TQIFPR
Length:136
Mass (Da):16,414
Last modified:November 13, 2007 - v2
Checksum:iEFA91E401632B1F3
GO

Sequence cautioni

The sequence AAB40754 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40754.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73659.2.
AP009048 Genomic DNA. Translation: BAE76334.1.
PIRiD64788.
RefSeqiNP_415090.2. NC_000913.3.
WP_000079503.1. NZ_CP014272.1.

Genome annotation databases

EnsemblBacteriaiAAC73659; AAC73659; b0558.
BAE76334; BAE76334; BAE76334.
GeneIDi945178.
KEGGiecj:JW5081.
eco:b0558.
PATRICi32116282. VBIEscCol129921_0581.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40754.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73659.2.
AP009048 Genomic DNA. Translation: BAE76334.1.
PIRiD64788.
RefSeqiNP_415090.2. NC_000913.3.
WP_000079503.1. NZ_CP014272.1.

3D structure databases

ProteinModelPortaliP77598.
SMRiP77598. Positions 3-128.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262823. 17 interactions.
DIPiDIP-11339N.
STRINGi511145.b0558.

Proteomic databases

PaxDbiP77598.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73659; AAC73659; b0558.
BAE76334; BAE76334; BAE76334.
GeneIDi945178.
KEGGiecj:JW5081.
eco:b0558.
PATRICi32116282. VBIEscCol129921_0581.

Organism-specific databases

EchoBASEiEB3402.
EcoGeneiEG13638. ybcV.

Phylogenomic databases

eggNOGiCOG5562. LUCA.
HOGENOMiHOG000119635.
OMAiLIETSYN.
PhylomeDBiP77598.

Enzyme and pathway databases

BioCyciEcoCyc:G6313-MONOMER.
ECOL316407:JW5081-MONOMER.

Miscellaneous databases

PROiP77598.

Family and domain databases

Gene3Di3.30.1810.10. 1 hit.
InterProiIPR009833. DUF1398.
[Graphical view]
PfamiPF07166. DUF1398. 1 hit.
[Graphical view]
ProDomiPD021249. DUF1398. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF160419. SSF160419. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBCV_ECOLI
AccessioniPrimary (citable) accession number: P77598
Secondary accession number(s): Q2MBM2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 13, 2007
Last modified: September 7, 2016
This is version 97 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.