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Protein

Protein YdeP

Gene

ydeP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

Probably involved in acid resistance.2 Publications

Cofactori

Protein has several cofactor binding sites:

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi49 – 491Iron-sulfur (4Fe-4S)By similarity
Metal bindingi52 – 521Iron-sulfur (4Fe-4S)By similarity

GO - Molecular functioni

GO - Biological processi

  • response to acidic pH Source: EcoCyc
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

4Fe-4S, Iron, Iron-sulfur, Metal-binding, Molybdenum

Enzyme and pathway databases

BioCyciEcoCyc:G6791-MONOMER.
ECOL316407:JW1495-MONOMER.
RETL1328306-WGS:GSTH-4731-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YdeP
Gene namesi
Name:ydeP
Ordered Locus Names:b1501, JW1495
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13798. ydeP.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 759759Protein YdePPRO_0000063227Add
BLAST

Proteomic databases

PaxDbiP77561.
PRIDEiP77561.

Expressioni

Inductioni

By EvgA.2 Publications

Interactioni

Protein-protein interaction databases

BioGridi4260213. 9 interactions.
DIPiDIP-28057N.
IntActiP77561. 11 interactions.
STRINGi511145.b1501.

Structurei

3D structure databases

ProteinModelPortaliP77561.
SMRiP77561. Positions 108-458.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4107QKC. Bacteria.
COG0243. LUCA.
HOGENOMiHOG000200066.
InParanoidiP77561.
OMAiNRSHLLI.
PhylomeDBiP77561.

Family and domain databases

InterProiIPR009010. Asp_de-COase-like_dom.
IPR006657. MoPterin_dinucl-bd_dom.
IPR006656. Mopterin_OxRdtase.
IPR010046. Mopterin_OxRdtse_a_bac.
[Graphical view]
PfamiPF00384. Molybdopterin. 1 hit.
PF01568. Molydop_binding. 1 hit.
[Graphical view]
PIRSFiPIRSF000144. CbbBc. 1 hit.
SUPFAMiSSF50692. SSF50692. 1 hit.
TIGRFAMsiTIGR01701. Fdhalpha-like. 1 hit.

Sequencei

Sequence statusi: Complete.

P77561-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKKKIESYQG AAGGWGAVKS VANAVRKQMD IRQDVIAMFD MNKPEGFDCP
60 70 80 90 100
GCAWPDPKHS ASFDICENGA KAIAWEVTDK QVNASFFAEN TVQSLLTWGD
110 120 130 140 150
HELEAAGRLT QPLKYDAVSD CYKPLSWQQA FDEIGARLQS YSDPNQVEFY
160 170 180 190 200
TSGRTSNEAA FLYQLFAREY GSNNFPDCSN MCHEPTSVGL AASIGVGKGT
210 220 230 240 250
VLLEDFEKCD LVICIGHNPG TNHPRMLTSL RALVKRGAKM IAINPLQERG
260 270 280 290 300
LERFTAPQNP FEMLTNSETQ LASAYYNVRI GGDMALLKGM MRLLIERDDA
310 320 330 340 350
ASAAGRPSLL DDEFIQTHTV GFDELRRDVL NSEWKDIERI SGLSQTQIAE
360 370 380 390 400
LADAYAAAER TIICYGMGIT QHEHGTQNVQ QLVNLLLMKG NIGKPGAGIC
410 420 430 440 450
PLRGHSNVQG DRTVGITEKP SAEFLARLGE RYGFTPPHAP GHAAIASMQA
460 470 480 490 500
ICTGQARALI CMGGNFALAM PDREASAVPL TQLDLAVHVA TKLNRSHLLT
510 520 530 540 550
ARHSYILPVL GRSEIDMQKN GAQAVTVEDS MSMIHASRGV LKPAGVMLKS
560 570 580 590 600
ECAVVAGIAQ AALPQSVVAW EYLVEDYDRI RNDIEAVLPE FADYNQRIRH
610 620 630 640 650
PGGFHLINAA AERRWMTPSG KANFITSKGL LEDPSSAFNS KLVMATVRSH
660 670 680 690 700
DQYNTTIYGM DDRYRGVFGQ RDVVFMSAKQ AKICRVKNGE RVNLIALTPD
710 720 730 740 750
GKRSSRRMDR LKVVIYPMAD RSLVTYFPES NHMLTLDNHD PLSGIPGYKS

IPVELEPSN
Length:759
Mass (Da):83,495
Last modified:February 1, 1997 - v1
Checksum:i4DE7C14068FB66DD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74574.1.
AP009048 Genomic DNA. Translation: BAA15174.1.
PIRiH64903.
RefSeqiNP_416018.1. NC_000913.3.
WP_000726691.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74574; AAC74574; b1501.
BAA15174; BAA15174; BAA15174.
GeneIDi946055.
KEGGiecj:JW1495.
eco:b1501.
PATRICi32118296. VBIEscCol129921_1568.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74574.1.
AP009048 Genomic DNA. Translation: BAA15174.1.
PIRiH64903.
RefSeqiNP_416018.1. NC_000913.3.
WP_000726691.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77561.
SMRiP77561. Positions 108-458.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260213. 9 interactions.
DIPiDIP-28057N.
IntActiP77561. 11 interactions.
STRINGi511145.b1501.

Proteomic databases

PaxDbiP77561.
PRIDEiP77561.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74574; AAC74574; b1501.
BAA15174; BAA15174; BAA15174.
GeneIDi946055.
KEGGiecj:JW1495.
eco:b1501.
PATRICi32118296. VBIEscCol129921_1568.

Organism-specific databases

EchoBASEiEB3559.
EcoGeneiEG13798. ydeP.

Phylogenomic databases

eggNOGiENOG4107QKC. Bacteria.
COG0243. LUCA.
HOGENOMiHOG000200066.
InParanoidiP77561.
OMAiNRSHLLI.
PhylomeDBiP77561.

Enzyme and pathway databases

BioCyciEcoCyc:G6791-MONOMER.
ECOL316407:JW1495-MONOMER.
RETL1328306-WGS:GSTH-4731-MONOMER.

Miscellaneous databases

PROiP77561.

Family and domain databases

InterProiIPR009010. Asp_de-COase-like_dom.
IPR006657. MoPterin_dinucl-bd_dom.
IPR006656. Mopterin_OxRdtase.
IPR010046. Mopterin_OxRdtse_a_bac.
[Graphical view]
PfamiPF00384. Molybdopterin. 1 hit.
PF01568. Molydop_binding. 1 hit.
[Graphical view]
PIRSFiPIRSF000144. CbbBc. 1 hit.
SUPFAMiSSF50692. SSF50692. 1 hit.
TIGRFAMsiTIGR01701. Fdhalpha-like. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDEP_ECOLI
AccessioniPrimary (citable) accession number: P77561
Secondary accession number(s): P78160
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 27, 2002
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.