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Protein

Uncharacterized HTH-type transcriptional regulator YnfL

Gene

ynfL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi20 – 40H-T-H motifPROSITE-ProRule annotationAdd BLAST21

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: UniProtKB-KW

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6853-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YnfL
Gene namesi
Name:ynfL
Ordered Locus Names:b1595, JW1587
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13850 ynfL

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001058091 – 297Uncharacterized HTH-type transcriptional regulator YnfLAdd BLAST297

Proteomic databases

PaxDbiP77559
PRIDEiP77559

Interactioni

Protein-protein interaction databases

BioGridi4259120, 11 interactors
DIPiDIP-12771N
IntActiP77559, 1 interactor
STRINGi316385.ECDH10B_1728

Structurei

3D structure databases

ProteinModelPortaliP77559
SMRiP77559
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 60HTH lysR-typePROSITE-ProRule annotationAdd BLAST60

Phylogenomic databases

eggNOGiENOG4106NZI Bacteria
ENOG410YGF0 LUCA
HOGENOMiHOG000233514
InParanoidiP77559
OMAiMDAVLGF
PhylomeDBiP77559

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P77559-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIELRHLRY FVAVAEELHF GRAAARLNIS QPPLSQQIQA LEQQIGARLL
60 70 80 90 100
ARTNRSVLLT AAGKQFLADS RQILSMVDDA AARAERLHQG EAGELRIGFT
110 120 130 140 150
SSAPFIRAVS DTLSLFRRDY PDVHLQTREM NTREQIAPLI EGTLDMGLLR
160 170 180 190 200
NTALPESLEH AVIVHEPLMA MIPHDHPLAN NPNVTLAELA KEPFVFFDPH
210 220 230 240 250
VGTGLYDDIL GLMRRYHLTP VITQEVGEAM TIIGLVSAGL GVSILPASFK
260 270 280 290
RVQLNEMRWV PIAEEDAVSE MWLVWPKHHE QSPAARNFRI HLLNALR
Length:297
Mass (Da):33,281
Last modified:February 1, 1997 - v1
Checksum:i7D110818B677EF3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74667.1
AP009048 Genomic DNA Translation: BAA15319.1
PIRiE64915
RefSeqiNP_416112.1, NC_000913.3
WP_001019525.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74667; AAC74667; b1595
BAA15319; BAA15319; BAA15319
GeneIDi946136
KEGGiecj:JW1587
eco:b1595
PATRICifig|1411691.4.peg.667

Similar proteinsi

Entry informationi

Entry nameiYNFL_ECOLI
AccessioniPrimary (citable) accession number: P77559
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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