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Protein

Uncharacterized protein YdhQ

Gene

ydhQ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Biological processi

  • cellular response to DNA damage stimulus Source: EcoliWiki
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6894-MONOMER.
ECOL316407:JW1656-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YdhQ
Gene namesi
Name:ydhQ
Ordered Locus Names:b1664, JW1656
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13951. ydhQ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 418418Uncharacterized protein YdhQPRO_0000201324Add
BLAST

Proteomic databases

PaxDbiP77552.
PRIDEiP77552.

Interactioni

Protein-protein interaction databases

DIPiDIP-28088N.
IntActiP77552. 15 interactions.
STRINGi511145.b1664.

Structurei

3D structure databases

ProteinModelPortaliP77552.
SMRiP77552. Positions 26-325.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG3468. LUCA.
HOGENOMiHOG000120908.
OMAiACNCEIN.
OrthoDBiEOG6G7QZG.
PhylomeDBiP77552.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
InterProiIPR030930. AIDA.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
[Graphical view]
PfamiPF16168. AIDA. 2 hits.
PF03212. Pertactin. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR04415. O_hepto_targRPT. 1 hit.

Sequencei

Sequence statusi: Complete.

P77552-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSDAKNLMS DGNVQIVKTG EVIGATQLTE GELIVEAGGR AENTVVTGAG
60 70 80 90 100
WLKVATGGIA KCTQYGNNGT LSVSDGAIAT DIVQSEGGAI SLSTLATVNG
110 120 130 140 150
RHPEGEFSVD KGYACGLLLE NGGNLRVLEG HRAEKIILDQ EGGLLVNGTT
160 170 180 190 200
SAVVVDEGGE LLVYPGGEAS NCEINQGGVF MLAGKASDTL LAGGTMNNLG
210 220 230 240 250
GEDSDTIVEN GSIYRLGTDG LQLYSSGKTQ NLSVNVGGRA EVHAGTLENA
260 270 280 290 300
VIQGGTVILL SPTSADENFV VEEDRAPVEL TGSVALLDGA SMIIGYGAEL
310 320 330 340 350
QQSTITVQQG GVLILDGSTV KGDSVTFIVG NINLNGGKLW LITDAATHVQ
360 370 380 390 400
LKVKRLRGEG AICLQTSAKE ISPDFINVKG EVTGDIHVEI TDASRQTLCN
410
ALKLQPDEDG IGATLQPA
Length:418
Mass (Da):42,876
Last modified:February 1, 1997 - v1
Checksum:i56360B78C2E6FDBF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47942.1.
U00096 Genomic DNA. Translation: AAC74736.1.
AP009048 Genomic DNA. Translation: BAA15431.1.
PIRiB64924.
RefSeqiNP_416181.1. NC_000913.3.
WP_000534271.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74736; AAC74736; b1664.
BAA15431; BAA15431; BAA15431.
GeneIDi944851.
KEGGiecj:JW1656.
eco:b1664.
PATRICi32118634. VBIEscCol129921_1737.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U68703 Genomic DNA. Translation: AAB47942.1.
U00096 Genomic DNA. Translation: AAC74736.1.
AP009048 Genomic DNA. Translation: BAA15431.1.
PIRiB64924.
RefSeqiNP_416181.1. NC_000913.3.
WP_000534271.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77552.
SMRiP77552. Positions 26-325.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-28088N.
IntActiP77552. 15 interactions.
STRINGi511145.b1664.

Proteomic databases

PaxDbiP77552.
PRIDEiP77552.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74736; AAC74736; b1664.
BAA15431; BAA15431; BAA15431.
GeneIDi944851.
KEGGiecj:JW1656.
eco:b1664.
PATRICi32118634. VBIEscCol129921_1737.

Organism-specific databases

EchoBASEiEB3709.
EcoGeneiEG13951. ydhQ.

Phylogenomic databases

eggNOGiCOG3468. LUCA.
HOGENOMiHOG000120908.
OMAiACNCEIN.
OrthoDBiEOG6G7QZG.
PhylomeDBiP77552.

Enzyme and pathway databases

BioCyciEcoCyc:G6894-MONOMER.
ECOL316407:JW1656-MONOMER.

Miscellaneous databases

PROiP77552.

Family and domain databases

Gene3Di2.160.20.20. 1 hit.
InterProiIPR030930. AIDA.
IPR012332. P22_tailspike_C-like.
IPR011050. Pectin_lyase_fold/virulence.
IPR004899. Pertactin_central.
[Graphical view]
PfamiPF16168. AIDA. 2 hits.
PF03212. Pertactin. 1 hit.
[Graphical view]
SUPFAMiSSF51126. SSF51126. 1 hit.
TIGRFAMsiTIGR04415. O_hepto_targRPT. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Analysis of the boundaries of Salmonella pathogenicity island 2 and the corresponding chromosomal region of Escherichia coli K-12."
    Hensel M., Shea J.E., Baeumler A.J., Gleeson C., Blattner F.R., Holden D.W.
    J. Bacteriol. 179:1105-1111(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDHQ_ECOLI
AccessioniPrimary (citable) accession number: P77552
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: February 1, 1997
Last modified: November 11, 2015
This is version 108 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.