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Protein

Uncharacterized protein YbdJ

Gene

ybdJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6325-MONOMER.
ECOL316407:JW0569-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YbdJ
Gene namesi
Name:ybdJ
Ordered Locus Names:b0580, JW0569
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13643. ybdJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei8 – 2821HelicalSequence analysisAdd
BLAST
Transmembranei50 – 7021HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 8282Uncharacterized protein YbdJPRO_0000168669Add
BLAST

Proteomic databases

PaxDbiP77506.

Interactioni

Protein-protein interaction databases

BioGridi4260713. 7 interactions.
STRINGi511145.b0580.

Structurei

3D structure databases

ProteinModelPortaliP77506.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105WQ6. Bacteria.
ENOG41122VD. LUCA.
HOGENOMiHOG000267877.
OMAiFVWRRWF.
OrthoDBiEOG6M9F3Q.

Family and domain databases

InterProiIPR010590. DUF1158.
[Graphical view]
PfamiPF06643. DUF1158. 1 hit.
[Graphical view]
ProDomiPD027061. DUF1158. 1 hit.
[Graphical view] [Entries sharing at least one domain]

Sequencei

Sequence statusi: Complete.

P77506-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKHPLETLTT AAGILLMAFL SCLLLPAPAL GLALAQKLVT MFHLMDLSQL
60 70 80
YTLLFCLWFL VLGAIEYFVL RFIWRRWFSL AD
Length:82
Mass (Da):9,404
Last modified:February 1, 1997 - v1
Checksum:i05C7DAFD1E440952
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40778.1.
U00096 Genomic DNA. Translation: AAC73681.1.
AP009048 Genomic DNA. Translation: BAA35220.1.
PIRiB64791.
RefSeqiNP_415112.1. NC_000913.3.
WP_000682509.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73681; AAC73681; b0580.
BAA35220; BAA35220; BAA35220.
GeneIDi947183.
KEGGiecj:JW0569.
eco:b0580.
PATRICi32116328. VBIEscCol129921_0604.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40778.1.
U00096 Genomic DNA. Translation: AAC73681.1.
AP009048 Genomic DNA. Translation: BAA35220.1.
PIRiB64791.
RefSeqiNP_415112.1. NC_000913.3.
WP_000682509.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77506.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260713. 7 interactions.
STRINGi511145.b0580.

Proteomic databases

PaxDbiP77506.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73681; AAC73681; b0580.
BAA35220; BAA35220; BAA35220.
GeneIDi947183.
KEGGiecj:JW0569.
eco:b0580.
PATRICi32116328. VBIEscCol129921_0604.

Organism-specific databases

EchoBASEiEB3407.
EcoGeneiEG13643. ybdJ.

Phylogenomic databases

eggNOGiENOG4105WQ6. Bacteria.
ENOG41122VD. LUCA.
HOGENOMiHOG000267877.
OMAiFVWRRWF.
OrthoDBiEOG6M9F3Q.

Enzyme and pathway databases

BioCyciEcoCyc:G6325-MONOMER.
ECOL316407:JW0569-MONOMER.

Miscellaneous databases

PROiP77506.

Family and domain databases

InterProiIPR010590. DUF1158.
[Graphical view]
PfamiPF06643. DUF1158. 1 hit.
[Graphical view]
ProDomiPD027061. DUF1158. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBDJ_ECOLI
AccessioniPrimary (citable) accession number: P77506
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.