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Protein

Uncharacterized ABC transporter permease YbbP

Gene

ybbP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:YBBP-MONOMER.
ECOL316407:JW0485-MONOMER.

Protein family/group databases

TCDBi3.A.1.122.15. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized ABC transporter permease YbbP
Gene namesi
Name:ybbP
Ordered Locus Names:b0496, JW0485
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13263. ybbP.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei15 – 3521HelicalSequence analysisAdd
BLAST
Transmembranei243 – 26321HelicalSequence analysisAdd
BLAST
Transmembranei301 – 32121HelicalSequence analysisAdd
BLAST
Transmembranei333 – 35321HelicalSequence analysisAdd
BLAST
Transmembranei381 – 40121HelicalSequence analysisAdd
BLAST
Transmembranei403 – 42321HelicalSequence analysisAdd
BLAST
Transmembranei453 – 47321HelicalSequence analysisAdd
BLAST
Transmembranei680 – 70021HelicalSequence analysisAdd
BLAST
Transmembranei734 – 75421HelicalSequence analysisAdd
BLAST
Transmembranei769 – 78921HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 804804Uncharacterized ABC transporter permease YbbPPRO_0000168642Add
BLAST

Proteomic databases

PaxDbiP77504.
PRIDEiP77504.

Interactioni

Protein-protein interaction databases

BioGridi4260708. 3 interactions.
DIPiDIP-11324N.
IntActiP77504. 3 interactions.
MINTiMINT-1286702.
STRINGi511145.b0496.

Structurei

3D structure databases

ProteinModelPortaliP77504.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CV6. Bacteria.
COG3127. LUCA.
HOGENOMiHOG000262709.
InParanoidiP77504.
KOiK02004.
OMAiAQIQVGM.
OrthoDBiEOG63586B.
PhylomeDBiP77504.

Family and domain databases

InterProiIPR003838. ABC_permease_dom.
[Graphical view]
PfamiPF02687. FtsX. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77504-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIARWFWREW RSPSLLIVWL ALSLAVACVL ALGNISDRME KGLSQQSREF
60 70 80 90 100
MAGDRALRSS REVPQAWLEE AQKRGLKVGK QLTFATMTFA GDTPQLANVK
110 120 130 140 150
AVDDIYPMYG DLQTNPPGLK PQAGSVLLAP RLMALLNLKT GDTIDVGDAT
160 170 180 190 200
LRIAGEVIQE PDSGFNPFQM APRLMMNLAD VDKTGAVQPG SRVTWRYKFG
210 220 230 240 250
GNENQLDGYE KWLLPQLKPE QRWYGLEQDE GALGRSMERS QQFLLLSALL
260 270 280 290 300
TLLLAVAAVA VAMNHYCRSR YDLVAILKTL GAGRAQLRKL IVGQWLMVLT
310 320 330 340 350
LSAVTGGAIG LLFENVLMVL LKPVLPAALP PASLWPWLWA LGTMTVISLL
360 370 380 390 400
VGLRPYRLLL ATQPLRVLRN DVVANVWPLK FYLPIVSVVV VLLLAGLMGG
410 420 430 440 450
SMLLWAVLAG AVVLALLCGV LGWMLLNVLR RMTLKSLPLR LAVSRLLRQP
460 470 480 490 500
WSTLSQLSAF SLSFMLLALL LVLRGDLLDR WQQQLPPESP NYFLINIATE
510 520 530 540 550
QVAPLKAFLA EHQIVPESFY PVVRARLTAI NDKPTEGNED EALNRELNLT
560 570 580 590 600
WQNTRPDHNP IVAGNWPPKA DEVSMEEGLA KRLNVALGDT VTFMGDTQEF
610 620 630 640 650
RAKVTSLRKV DWESLRPNFY FIFPEGALDG QPQSWLTSFR WENGNGMLTQ
660 670 680 690 700
LNRQFPTISL LDIGAILKQV GQVLEQVSRA LEVMVVLVTA CGMLLLLAQV
710 720 730 740 750
QVGMRQRHQE LVVWRTLGAG KKLLRTTLWC EFAMLGFVSG LVAAIGAETA
760 770 780 790 800
LAVLQAKVFD FPWEPDWRLW IVLPCSGALL LSLFGGWLGA RLVKGKALFR

QFAG
Length:804
Mass (Da):89,332
Last modified:February 1, 1997 - v1
Checksum:i347368131069907A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40250.1.
U00096 Genomic DNA. Translation: AAC73598.1.
AP009048 Genomic DNA. Translation: BAE76275.1.
PIRiG64780.
RefSeqiNP_415029.1. NC_000913.3.
WP_000561872.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73598; AAC73598; b0496.
BAE76275; BAE76275; BAE76275.
GeneIDi945118.
KEGGiecj:JW0485.
eco:b0496.
PATRICi32116151. VBIEscCol129921_0517.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40250.1.
U00096 Genomic DNA. Translation: AAC73598.1.
AP009048 Genomic DNA. Translation: BAE76275.1.
PIRiG64780.
RefSeqiNP_415029.1. NC_000913.3.
WP_000561872.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77504.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260708. 3 interactions.
DIPiDIP-11324N.
IntActiP77504. 3 interactions.
MINTiMINT-1286702.
STRINGi511145.b0496.

Protein family/group databases

TCDBi3.A.1.122.15. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP77504.
PRIDEiP77504.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73598; AAC73598; b0496.
BAE76275; BAE76275; BAE76275.
GeneIDi945118.
KEGGiecj:JW0485.
eco:b0496.
PATRICi32116151. VBIEscCol129921_0517.

Organism-specific databases

EchoBASEiEB3051.
EcoGeneiEG13263. ybbP.

Phylogenomic databases

eggNOGiENOG4105CV6. Bacteria.
COG3127. LUCA.
HOGENOMiHOG000262709.
InParanoidiP77504.
KOiK02004.
OMAiAQIQVGM.
OrthoDBiEOG63586B.
PhylomeDBiP77504.

Enzyme and pathway databases

BioCyciEcoCyc:YBBP-MONOMER.
ECOL316407:JW0485-MONOMER.

Miscellaneous databases

PROiP77504.

Family and domain databases

InterProiIPR003838. ABC_permease_dom.
[Graphical view]
PfamiPF02687. FtsX. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBBP_ECOLI
AccessioniPrimary (citable) accession number: P77504
Secondary accession number(s): Q2MBT1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.