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Protein

Uncharacterized sugar kinase YdjH

Gene

ydjH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Enzyme and pathway databases

BioCyciEcoCyc:G6959-MONOMER.
ECOL316407:JW5289-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized sugar kinase YdjH (EC:2.7.1.-)
Gene namesi
Name:ydjH
Ordered Locus Names:b1772, JW5289
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13484. ydjH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 315315Uncharacterized sugar kinase YdjHPRO_0000080145Add
BLAST

Proteomic databases

PaxDbiP77493.
PRIDEiP77493.

Interactioni

Protein-protein interaction databases

BioGridi4259545. 94 interactions.
IntActiP77493. 2 interactions.
STRINGi511145.b1772.

Structurei

Secondary structure

1
315
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi4 – 107Combined sources
Beta strandi13 – 186Combined sources
Helixi23 – 275Combined sources
Beta strandi39 – 424Combined sources
Helixi43 – 5311Combined sources
Beta strandi57 – 615Combined sources
Beta strandi63 – 675Combined sources
Helixi68 – 8013Combined sources
Beta strandi88 – 903Combined sources
Beta strandi97 – 1026Combined sources
Beta strandi108 – 1114Combined sources
Helixi117 – 1204Combined sources
Helixi123 – 1253Combined sources
Helixi128 – 1336Combined sources
Beta strandi135 – 1428Combined sources
Helixi150 – 16213Combined sources
Beta strandi166 – 1716Combined sources
Beta strandi175 – 1773Combined sources
Helixi180 – 1878Combined sources
Beta strandi191 – 1944Combined sources
Helixi197 – 2048Combined sources
Helixi209 – 2179Combined sources
Turni218 – 2203Combined sources
Beta strandi222 – 2276Combined sources
Helixi229 – 2313Combined sources
Beta strandi233 – 2375Combined sources
Beta strandi240 – 2445Combined sources
Helixi258 – 27114Combined sources
Helixi276 – 29116Combined sources
Beta strandi293 – 2997Combined sources
Beta strandi301 – 3033Combined sources
Helixi304 – 3074Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3H49X-ray1.80A/B2-315[»]
3IN1X-ray2.15A/B2-315[»]
ProteinModelPortaliP77493.
SMRiP77493. Positions 3-314.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP77493.

Family & Domainsi

Sequence similaritiesi

Belongs to the carbohydrate kinase PfkB family.Curated

Phylogenomic databases

eggNOGiENOG4107UH8. Bacteria.
COG0524. LUCA.
HOGENOMiHOG000121120.
InParanoidiP77493.
OMAiLIICADM.
OrthoDBiEOG6C8MTX.
PhylomeDBiP77493.

Family and domain databases

Gene3Di3.40.1190.20. 1 hit.
InterProiIPR002173. Carboh/pur_kinase_PfkB_CS.
IPR011611. PfkB_dom.
IPR002139. Ribo/fructo_kinase.
IPR029056. Ribokinase-like.
[Graphical view]
PfamiPF00294. PfkB. 1 hit.
[Graphical view]
PRINTSiPR00990. RIBOKINASE.
SUPFAMiSSF53613. SSF53613. 1 hit.
PROSITEiPS00583. PFKB_KINASES_1. 1 hit.
PS00584. PFKB_KINASES_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNLDVICIG AAIVDIPLQP VSKNIFDVDS YPLERIAMTT GGDAINEATI
60 70 80 90 100
ISRLGHRTAL MSRIGKDAAG QFILDHCRKE NIDIQSLKQD VSIDTSINVG
110 120 130 140 150
LVTEDGERTF VTNRNGSLWK LNIDDVDFAR FSQAKLLSLA SIFNSPLLDG
160 170 180 190 200
KALTEIFTQA KARQMIICAD MIKPRLNETL DDICEALSYV DYLFPNFAEA
210 220 230 240 250
KLLTGKETLD EIADCFLACG VKTVVIKTGK DGCFIKRGDM TMKVPAVAGI
260 270 280 290 300
TAIDTIGAGD NFASGFIAAL LEGKNLRECA RFANATAAIS VLSVGATTGV
310
KNRKLVEQLL EEYEG
Length:315
Mass (Da):34,121
Last modified:December 15, 1998 - v2
Checksum:i9E9BD9E2B617B2A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74842.2.
AP009048 Genomic DNA. Translation: BAA15563.2.
PIRiD64937.
RefSeqiNP_416286.4. NC_000913.3.
WP_000369231.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74842; AAC74842; b1772.
BAA15563; BAA15563; BAA15563.
GeneIDi946285.
KEGGiecj:JW5289.
eco:b1772.
PATRICi32118855. VBIEscCol129921_1845.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74842.2.
AP009048 Genomic DNA. Translation: BAA15563.2.
PIRiD64937.
RefSeqiNP_416286.4. NC_000913.3.
WP_000369231.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3H49X-ray1.80A/B2-315[»]
3IN1X-ray2.15A/B2-315[»]
ProteinModelPortaliP77493.
SMRiP77493. Positions 3-314.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259545. 94 interactions.
IntActiP77493. 2 interactions.
STRINGi511145.b1772.

Proteomic databases

PaxDbiP77493.
PRIDEiP77493.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74842; AAC74842; b1772.
BAA15563; BAA15563; BAA15563.
GeneIDi946285.
KEGGiecj:JW5289.
eco:b1772.
PATRICi32118855. VBIEscCol129921_1845.

Organism-specific databases

EchoBASEiEB3257.
EcoGeneiEG13484. ydjH.

Phylogenomic databases

eggNOGiENOG4107UH8. Bacteria.
COG0524. LUCA.
HOGENOMiHOG000121120.
InParanoidiP77493.
OMAiLIICADM.
OrthoDBiEOG6C8MTX.
PhylomeDBiP77493.

Enzyme and pathway databases

BioCyciEcoCyc:G6959-MONOMER.
ECOL316407:JW5289-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP77493.
PROiP77493.

Family and domain databases

Gene3Di3.40.1190.20. 1 hit.
InterProiIPR002173. Carboh/pur_kinase_PfkB_CS.
IPR011611. PfkB_dom.
IPR002139. Ribo/fructo_kinase.
IPR029056. Ribokinase-like.
[Graphical view]
PfamiPF00294. PfkB. 1 hit.
[Graphical view]
PRINTSiPR00990. RIBOKINASE.
SUPFAMiSSF53613. SSF53613. 1 hit.
PROSITEiPS00583. PFKB_KINASES_1. 1 hit.
PS00584. PFKB_KINASES_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYDJH_ECOLI
AccessioniPrimary (citable) accession number: P77493
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: December 15, 1998
Last modified: July 6, 2016
This is version 105 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.