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Protein

Uncharacterized sugar kinase YdjH

Gene

ydjH

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Enzyme and pathway databases

BioCyciEcoCyc:G6959-MONOMER.
ECOL316407:JW5289-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized sugar kinase YdjH (EC:2.7.1.-)
Gene namesi
Name:ydjH
Ordered Locus Names:b1772, JW5289
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13484. ydjH.

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000801451 – 315Uncharacterized sugar kinase YdjHAdd BLAST315

Proteomic databases

PaxDbiP77493.
PRIDEiP77493.

Interactioni

Protein-protein interaction databases

BioGridi4259545. 94 interactors.
IntActiP77493. 2 interactors.
STRINGi511145.b1772.

Structurei

Secondary structure

1315
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 10Combined sources7
Beta strandi13 – 18Combined sources6
Helixi23 – 27Combined sources5
Beta strandi39 – 42Combined sources4
Helixi43 – 53Combined sources11
Beta strandi57 – 61Combined sources5
Beta strandi63 – 67Combined sources5
Helixi68 – 80Combined sources13
Beta strandi88 – 90Combined sources3
Beta strandi97 – 102Combined sources6
Beta strandi108 – 111Combined sources4
Helixi117 – 120Combined sources4
Helixi123 – 125Combined sources3
Helixi128 – 133Combined sources6
Beta strandi135 – 142Combined sources8
Helixi150 – 162Combined sources13
Beta strandi166 – 171Combined sources6
Beta strandi175 – 177Combined sources3
Helixi180 – 187Combined sources8
Beta strandi191 – 194Combined sources4
Helixi197 – 204Combined sources8
Helixi209 – 217Combined sources9
Turni218 – 220Combined sources3
Beta strandi222 – 227Combined sources6
Helixi229 – 231Combined sources3
Beta strandi233 – 237Combined sources5
Beta strandi240 – 244Combined sources5
Helixi258 – 271Combined sources14
Helixi276 – 291Combined sources16
Beta strandi293 – 299Combined sources7
Beta strandi301 – 303Combined sources3
Helixi304 – 307Combined sources4

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3H49X-ray1.80A/B2-315[»]
3IN1X-ray2.15A/B2-315[»]
ProteinModelPortaliP77493.
SMRiP77493.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP77493.

Family & Domainsi

Sequence similaritiesi

Belongs to the carbohydrate kinase PfkB family.Curated

Phylogenomic databases

eggNOGiENOG4107UH8. Bacteria.
COG0524. LUCA.
HOGENOMiHOG000121120.
InParanoidiP77493.
OMAiLIICADM.
PhylomeDBiP77493.

Family and domain databases

Gene3Di3.40.1190.20. 1 hit.
InterProiIPR002173. Carboh/pur_kinase_PfkB_CS.
IPR011611. PfkB_dom.
IPR002139. Ribo/fructo_kinase.
IPR029056. Ribokinase-like.
[Graphical view]
PfamiPF00294. PfkB. 1 hit.
[Graphical view]
PRINTSiPR00990. RIBOKINASE.
SUPFAMiSSF53613. SSF53613. 1 hit.
PROSITEiPS00583. PFKB_KINASES_1. 1 hit.
PS00584. PFKB_KINASES_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77493-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDNLDVICIG AAIVDIPLQP VSKNIFDVDS YPLERIAMTT GGDAINEATI
60 70 80 90 100
ISRLGHRTAL MSRIGKDAAG QFILDHCRKE NIDIQSLKQD VSIDTSINVG
110 120 130 140 150
LVTEDGERTF VTNRNGSLWK LNIDDVDFAR FSQAKLLSLA SIFNSPLLDG
160 170 180 190 200
KALTEIFTQA KARQMIICAD MIKPRLNETL DDICEALSYV DYLFPNFAEA
210 220 230 240 250
KLLTGKETLD EIADCFLACG VKTVVIKTGK DGCFIKRGDM TMKVPAVAGI
260 270 280 290 300
TAIDTIGAGD NFASGFIAAL LEGKNLRECA RFANATAAIS VLSVGATTGV
310
KNRKLVEQLL EEYEG
Length:315
Mass (Da):34,121
Last modified:December 15, 1998 - v2
Checksum:i9E9BD9E2B617B2A7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74842.2.
AP009048 Genomic DNA. Translation: BAA15563.2.
PIRiD64937.
RefSeqiNP_416286.4. NC_000913.3.
WP_000369231.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74842; AAC74842; b1772.
BAA15563; BAA15563; BAA15563.
GeneIDi946285.
KEGGiecj:JW5289.
eco:b1772.
PATRICi32118855. VBIEscCol129921_1845.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74842.2.
AP009048 Genomic DNA. Translation: BAA15563.2.
PIRiD64937.
RefSeqiNP_416286.4. NC_000913.3.
WP_000369231.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3H49X-ray1.80A/B2-315[»]
3IN1X-ray2.15A/B2-315[»]
ProteinModelPortaliP77493.
SMRiP77493.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259545. 94 interactors.
IntActiP77493. 2 interactors.
STRINGi511145.b1772.

Proteomic databases

PaxDbiP77493.
PRIDEiP77493.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74842; AAC74842; b1772.
BAA15563; BAA15563; BAA15563.
GeneIDi946285.
KEGGiecj:JW5289.
eco:b1772.
PATRICi32118855. VBIEscCol129921_1845.

Organism-specific databases

EchoBASEiEB3257.
EcoGeneiEG13484. ydjH.

Phylogenomic databases

eggNOGiENOG4107UH8. Bacteria.
COG0524. LUCA.
HOGENOMiHOG000121120.
InParanoidiP77493.
OMAiLIICADM.
PhylomeDBiP77493.

Enzyme and pathway databases

BioCyciEcoCyc:G6959-MONOMER.
ECOL316407:JW5289-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP77493.
PROiP77493.

Family and domain databases

Gene3Di3.40.1190.20. 1 hit.
InterProiIPR002173. Carboh/pur_kinase_PfkB_CS.
IPR011611. PfkB_dom.
IPR002139. Ribo/fructo_kinase.
IPR029056. Ribokinase-like.
[Graphical view]
PfamiPF00294. PfkB. 1 hit.
[Graphical view]
PRINTSiPR00990. RIBOKINASE.
SUPFAMiSSF53613. SSF53613. 1 hit.
PROSITEiPS00583. PFKB_KINASES_1. 1 hit.
PS00584. PFKB_KINASES_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDJH_ECOLI
AccessioniPrimary (citable) accession number: P77493
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: December 15, 1998
Last modified: November 2, 2016
This is version 107 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.