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Protein

Putative uncharacterized ABC transporter ATP-binding protein YcjV

Gene

ycjV

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi37 – 448ATPPROSITE-ProRule annotation

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Transport

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciEcoCyc:YCJV-MONOMER.
ECOL316407:JW1311-MONOMER.
ECOL316407:JW5203-MONOMER.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized ABC transporter ATP-binding protein YcjV
Gene namesi
Name:ycjV
Synonyms:ymjB
Ordered Locus Names:b4524, JW1311/JW5203
ORF Names:b1318
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13919. ycjV.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 360360Putative uncharacterized ABC transporter ATP-binding protein YcjVPRO_0000093161Add
BLAST

Proteomic databases

PRIDEiP77481.

Interactioni

Protein-protein interaction databases

BioGridi4260144. 11 interactions.
4260145. 9 interactions.
DIPiDIP-11613N.
STRINGi316407.1742155.

Structurei

3D structure databases

ProteinModelPortaliP77481.
SMRiP77481. Positions 1-359.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini4 – 235232ABC transporterPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated
Contains 1 ABC transporter domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108IJ9. Bacteria.
COG3839. LUCA.
InParanoidiP77481.
KOiK10112.
OMAiATHYSVE.
PhylomeDBiP77481.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR008995. Mo/tungstate-bd_C_term_dom.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR013611. Transp-assoc_OB_typ2.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08402. TOBE_2. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50331. SSF50331. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77481-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQLSLQHIQ KIYDNQVHVV KDFNLEIADK EFIVFVGPSG CGKSTTLRMI
60 70 80 90 100
AGLEEISGGD LLIDGKRMND VPAKARNIAM VFQNYALYPH MTVYDNMAFG
110 120 130 140 150
LKMQKIAKEV IDERVNWAAQ ILGLREYLKR KPGALSGGQR QRVALGRAIV
160 170 180 190 200
REAGVFLMDE PLSNLDAKLR VQMRAEISKL HQKLNTTMIY VTHDQTEAMT
210 220 230 240 250
MATRIVIMKD GIVQQVGAPK TVYNQPANMF VSGFIGSPAM NFIRGTIDGD
260 270 280 290 300
KFVTETLKLT IPEEKLAVLK TQESLHKPIV MGIRPEDIHP DAQEENNISA
310 320 330 340 350
KISVAELTGA EFMLYTTVGG HELVVRAGAL NDYHAGENIT IHFDMTKCHF
360
FDAETEIAIR
Length:360
Mass (Da):40,147
Last modified:November 28, 2006 - v2
Checksum:iA43741ED7034DA46
GO

Sequence cautioni

The sequence AAC34719.1 differs from that shown. Reason: Frameshift at position 321. Curated
The sequence BAA14893.1 differs from that shown. Reason: Frameshift at position 321. Curated
The sequence BAE76400.1 differs from that shown. Reason: Frameshift at position 321. Curated
The sequence U00096 differs from that shown. Reason: Frameshift at position 321. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti37 – 382GP → AA in AAC34719 (PubMed:9721282).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49400 Genomic DNA. Translation: AAC34719.1. Frameshift.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA14893.1. Frameshift.
AP009048 Genomic DNA. Translation: BAE76400.1. Frameshift.
PIRiA64881.

Genome annotation databases

EnsemblBacteriaiBAA14893; BAA14893; BAA14893.
BAE76400; BAE76400; BAE76400.
KEGGiecj:JW1311.
ecj:JW5203.
PATRICi48661931. VBIEscCol107702_1329.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U49400 Genomic DNA. Translation: AAC34719.1. Frameshift.
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA14893.1. Frameshift.
AP009048 Genomic DNA. Translation: BAE76400.1. Frameshift.
PIRiA64881.

3D structure databases

ProteinModelPortaliP77481.
SMRiP77481. Positions 1-359.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260144. 11 interactions.
4260145. 9 interactions.
DIPiDIP-11613N.
STRINGi316407.1742155.

Protein family/group databases

TCDBi3.A.1.1.46. the atp-binding cassette (abc) superfamily.

Proteomic databases

PRIDEiP77481.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA14893; BAA14893; BAA14893.
BAE76400; BAE76400; BAE76400.
KEGGiecj:JW1311.
ecj:JW5203.
PATRICi48661931. VBIEscCol107702_1329.

Organism-specific databases

EchoBASEiEB3678.
EcoGeneiEG13919. ycjV.

Phylogenomic databases

eggNOGiENOG4108IJ9. Bacteria.
COG3839. LUCA.
InParanoidiP77481.
KOiK10112.
OMAiATHYSVE.
PhylomeDBiP77481.

Enzyme and pathway databases

BioCyciEcoCyc:YCJV-MONOMER.
ECOL316407:JW1311-MONOMER.
ECOL316407:JW5203-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.300. 1 hit.
InterProiIPR003593. AAA+_ATPase.
IPR003439. ABC_transporter-like.
IPR017871. ABC_transporter_CS.
IPR008995. Mo/tungstate-bd_C_term_dom.
IPR012340. NA-bd_OB-fold.
IPR027417. P-loop_NTPase.
IPR013611. Transp-assoc_OB_typ2.
[Graphical view]
PfamiPF00005. ABC_tran. 1 hit.
PF08402. TOBE_2. 1 hit.
[Graphical view]
SMARTiSM00382. AAA. 1 hit.
[Graphical view]
SUPFAMiSSF50331. SSF50331. 1 hit.
SSF52540. SSF52540. 1 hit.
PROSITEiPS00211. ABC_TRANSPORTER_1. 1 hit.
PS50893. ABC_TRANSPORTER_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Biochemistry and regulation of a novel Escherichia coli K-12 porin protein, OmpG, which produces unusually large channels."
    Fajardo D.A., Cheung J., Ito C., Sugawara E., Nikaido H., Misra R.
    J. Bacteriol. 180:4452-4459(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    Strain: K12.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYCJV_ECOLI
AccessioniPrimary (citable) accession number: P77481
Secondary accession number(s): P76842, Q2EER6, Q2MBF6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 28, 2006
Last modified: January 20, 2016
This is version 115 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.