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Protein

Uncharacterized HTH-type transcriptional regulator YdiP

Gene

ydiP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi199 – 218H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

  • regulation of transcription, DNA-templated Source: GO_Central
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6919-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdiP
Gene namesi
Name:ydiP
Ordered Locus Names:b1696, JW1686
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13975 ydiP

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001946101 – 303Uncharacterized HTH-type transcriptional regulator YdiPAdd BLAST303

Proteomic databases

PaxDbiP77402
PRIDEiP77402

Interactioni

Protein-protein interaction databases

BioGridi4260292, 16 interactors
DIPiDIP-11757N
IntActiP77402, 1 interactor
STRINGi316385.ECDH10B_1832

Structurei

3D structure databases

ProteinModelPortaliP77402
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105W4W Bacteria
ENOG410XVZJ LUCA
HOGENOMiHOG000120975
InParanoidiP77402
OMAiMTVPSFC
PhylomeDBiP77402

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR003313 AraC-bd
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PfamiView protein in Pfam
PF02311 AraC_binding, 1 hit
PF12833 HTH_18, 1 hit
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
SSF51182 SSF51182, 1 hit
PROSITEiView protein in PROSITE
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77402-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYQRCFDNAS ETLFVAGKTP RLSRFAFSDD PKWESGHHVH DNETELIYVK
60 70 80 90 100
KGVARFTIDS SLYVAHADDI VVIERGRLHA VASDVNDPAT TCTCALYGFQ
110 120 130 140 150
FQGAEENQLL QPHSCPVIAA GQGKEVIKTL FNELSVILPQ SKNSQTSSLW
160 170 180 190 200
DAFAYTLAIL YYENFKNAYR SEQGYIKKDV LIKDILFYLN NNYREKITLE
210 220 230 240 250
QLSKKFRASV SYICHEFTKE YRISPINYVI QRRMTEAKWS LTNTELSQAE
260 270 280 290 300
ISWRVGYENV DHFAKLFLRH VGCSPSDYRR QFKNCFAEQE ILSEFPQPVS

LVG
Length:303
Mass (Da):34,894
Last modified:February 1, 1997 - v1
Checksum:iEABEFFEA720ED137
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74766.1
AP009048 Genomic DNA Translation: BAA15465.1
PIRiH64927
RefSeqiNP_416211.1, NC_000913.3
WP_000284799.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74766; AAC74766; b1696
BAA15465; BAA15465; BAA15465
GeneIDi945095
KEGGiecj:JW1686
eco:b1696
PATRICifig|1411691.4.peg.562

Similar proteinsi

Entry informationi

Entry nameiYDIP_ECOLI
AccessioniPrimary (citable) accession number: P77402
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: April 25, 2018
This is version 142 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health