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Protein

Inner membrane transport protein YbaT

Gene

ybaT

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Probable amino-acid or metabolite transport protein.

GO - Molecular functioni

GO - Biological processi

  • response to pH Source: EcoCyc
Complete GO annotation...

Keywords - Biological processi

Amino-acid transport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:B0486-MONOMER.
ECOL316407:JW0475-MONOMER.

Protein family/group databases

TCDBi2.A.3.6.4. the amino acid-polyamine-organocation (apc) family.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport protein YbaT
Gene namesi
Name:ybaT
Ordered Locus Names:b0486, JW0475
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13248. ybaT.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 1414CytoplasmicSequence analysisAdd
BLAST
Transmembranei15 – 3521HelicalSequence analysisAdd
BLAST
Topological domaini36 – 383PeriplasmicSequence analysis
Transmembranei39 – 5921HelicalSequence analysisAdd
BLAST
Topological domaini60 – 8829CytoplasmicSequence analysisAdd
BLAST
Transmembranei89 – 10921HelicalSequence analysisAdd
BLAST
Topological domaini110 – 12819PeriplasmicSequence analysisAdd
BLAST
Transmembranei129 – 14921HelicalSequence analysisAdd
BLAST
Topological domaini150 – 1578CytoplasmicSequence analysis
Transmembranei158 – 17821HelicalSequence analysisAdd
BLAST
Topological domaini179 – 19214PeriplasmicSequence analysisAdd
BLAST
Transmembranei193 – 21321HelicalSequence analysisAdd
BLAST
Topological domaini214 – 22815CytoplasmicSequence analysisAdd
BLAST
Transmembranei229 – 24921HelicalSequence analysisAdd
BLAST
Topological domaini250 – 27223PeriplasmicSequence analysisAdd
BLAST
Transmembranei273 – 29321HelicalSequence analysisAdd
BLAST
Topological domaini294 – 32532CytoplasmicSequence analysisAdd
BLAST
Transmembranei326 – 34621HelicalSequence analysisAdd
BLAST
Topological domaini347 – 3471PeriplasmicSequence analysis
Transmembranei348 – 36821HelicalSequence analysisAdd
BLAST
Topological domaini369 – 37911CytoplasmicSequence analysisAdd
BLAST
Transmembranei380 – 40021HelicalSequence analysisAdd
BLAST
Topological domaini401 – 4033PeriplasmicSequence analysis
Transmembranei404 – 42421HelicalSequence analysisAdd
BLAST
Topological domaini425 – 4306CytoplasmicSequence analysis

GO - Cellular componenti

  • integral component of plasma membrane Source: GO_Central
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 430430Inner membrane transport protein YbaTPRO_0000054214Add
BLAST

Proteomic databases

PaxDbiP77400.

Interactioni

Protein-protein interaction databases

BioGridi4261285. 126 interactions.
DIPiDIP-11308N.
IntActiP77400. 1 interaction.
MINTiMINT-1267628.
STRINGi511145.b0486.

Structurei

3D structure databases

ProteinModelPortaliP77400.
SMRiP77400. Positions 10-426.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4107RY6. Bacteria.
COG0531. LUCA.
HOGENOMiHOG000050034.
InParanoidiP77400.
OMAiHAFGAYA.
PhylomeDBiP77400.

Family and domain databases

InterProiIPR002293. AA/rel_permease1.
[Graphical view]
PANTHERiPTHR11785. PTHR11785. 1 hit.
PfamiPF13520. AA_permease_2. 1 hit.
[Graphical view]
PIRSFiPIRSF006060. AA_transporter. 1 hit.

Sequencei

Sequence statusi: Complete.

P77400-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MMNTEGNNGN KPLGLWNVVS IGIGAMVGAG IFALLGQAAL LMEASTWVAF
60 70 80 90 100
AFGGIVAMFS GYAYARLGAS YPSNGGIIDF FRRGLGNGVF SLALSLLYLL
110 120 130 140 150
TLAVSIAMVA RAFGAYAVQF LHEGSQEEHL ILLYALGIIA VMTLFNSLSN
160 170 180 190 200
HAVGRLEVIL VGIKMMILLL LIIAGVWSLQ PAHISVSAPP SSGAFFSCIG
210 220 230 240 250
ITFLAYAGFG MMANAADKVK DPQVIMPRAF LVAIGVTTLL YISLALVLLS
260 270 280 290 300
DVSALELEKY ADTAVAQAAS PLLGHVGYVI VVIGALLATA SAINANLFAV
310 320 330 340 350
FNIMDNMGSE RELPKLMNKS LWRQSTWGNI IVVVLIMLMT AALNLGSLAS
360 370 380 390 400
VASATFLICY LAVFVVAIRL RHDIHASLPI LIVGTLVMLL VIVGFIYSLW
410 420 430
SQGSRALIWI IGSLLLSLIV AMVMKRNKTV
Length:430
Mass (Da):45,659
Last modified:February 1, 1997 - v1
Checksum:i7D6ACD50AD253FE9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40240.1.
U00096 Genomic DNA. Translation: AAC73588.1.
AP009048 Genomic DNA. Translation: BAE76265.1.
PIRiE64779.
RefSeqiNP_415019.1. NC_000913.3.
WP_000982172.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73588; AAC73588; b0486.
BAE76265; BAE76265; BAE76265.
GeneIDi945363.
KEGGiecj:JW0475.
eco:b0486.
PATRICi32116131. VBIEscCol129921_0507.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82664 Genomic DNA. Translation: AAB40240.1.
U00096 Genomic DNA. Translation: AAC73588.1.
AP009048 Genomic DNA. Translation: BAE76265.1.
PIRiE64779.
RefSeqiNP_415019.1. NC_000913.3.
WP_000982172.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77400.
SMRiP77400. Positions 10-426.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261285. 126 interactions.
DIPiDIP-11308N.
IntActiP77400. 1 interaction.
MINTiMINT-1267628.
STRINGi511145.b0486.

Protein family/group databases

TCDBi2.A.3.6.4. the amino acid-polyamine-organocation (apc) family.

Proteomic databases

PaxDbiP77400.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73588; AAC73588; b0486.
BAE76265; BAE76265; BAE76265.
GeneIDi945363.
KEGGiecj:JW0475.
eco:b0486.
PATRICi32116131. VBIEscCol129921_0507.

Organism-specific databases

EchoBASEiEB3037.
EcoGeneiEG13248. ybaT.

Phylogenomic databases

eggNOGiENOG4107RY6. Bacteria.
COG0531. LUCA.
HOGENOMiHOG000050034.
InParanoidiP77400.
OMAiHAFGAYA.
PhylomeDBiP77400.

Enzyme and pathway databases

BioCyciEcoCyc:B0486-MONOMER.
ECOL316407:JW0475-MONOMER.

Miscellaneous databases

PROiP77400.

Family and domain databases

InterProiIPR002293. AA/rel_permease1.
[Graphical view]
PANTHERiPTHR11785. PTHR11785. 1 hit.
PfamiPF13520. AA_permease_2. 1 hit.
[Graphical view]
PIRSFiPIRSF006060. AA_transporter. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBAT_ECOLI
AccessioniPrimary (citable) accession number: P77400
Secondary accession number(s): Q2MBU1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 124 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.