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Protein

Uncharacterized HTH-type transcriptional regulator YpdC

Gene

ypdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi200 – 21920H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G7245-MONOMER.
ECOL316407:JW2379-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YpdC
Gene namesi
Name:ypdC
Ordered Locus Names:b2382, JW2379
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14150. ypdC.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 285285Uncharacterized HTH-type transcriptional regulator YpdCPRO_0000194617Add
BLAST

Proteomic databases

PaxDbiP77396.
PRIDEiP77396.

Interactioni

Protein-protein interaction databases

BioGridi4263009. 10 interactions.
IntActiP77396. 8 interactions.
STRINGi511145.b2382.

Structurei

3D structure databases

ProteinModelPortaliP77396.
SMRiP77396. Positions 187-281.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 HTH araC/xylS-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG4108CIP. Bacteria.
ENOG410XTD9. LUCA.
HOGENOMiHOG000274763.
InParanoidiP77396.
OMAiHRPITRD.
OrthoDBiEOG6N946P.
PhylomeDBiP77396.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
PRINTSiPR00032. HTHARAC.
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77396-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAPGLPADQ QFFADLFSGL VLNPQLLGRV WFASQPASLP VGSLCIDFPR
60 70 80 90 100
LDIVLRGEYG NLLEAKQQRL VEGEMLFIPA RAANLPVNNK PVMLLSLVFA
110 120 130 140 150
PTWLGLSFYD SRTTSLLHPA RQIQLPSLQR GEGEAMLTAL THLSRSPLEQ
160 170 180 190 200
NIIQPLVLSL LHLCRSVVNM PPGNSQPRGD FLYHSICNWV QDNYAQPLTR
210 220 230 240 250
ESVAQFFNIT PNHLSKLFAQ HGTMRFIEYV RWVRMAKARM ILQKYHLSIH
260 270 280
EVAQRCGFPD SDYFCRVFRR QFGLTPGEYS ARFQG
Length:285
Mass (Da):32,356
Last modified:February 1, 1997 - v1
Checksum:i6F6A2DCA15BA8E4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75441.1.
AP009048 Genomic DNA. Translation: BAA16252.1.
PIRiC65012.
RefSeqiNP_416883.1. NC_000913.3.
WP_000646835.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75441; AAC75441; b2382.
BAA16252; BAA16252; BAA16252.
GeneIDi946856.
KEGGiecj:JW2379.
eco:b2382.
PATRICi32120143. VBIEscCol129921_2480.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75441.1.
AP009048 Genomic DNA. Translation: BAA16252.1.
PIRiC65012.
RefSeqiNP_416883.1. NC_000913.3.
WP_000646835.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77396.
SMRiP77396. Positions 187-281.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4263009. 10 interactions.
IntActiP77396. 8 interactions.
STRINGi511145.b2382.

Proteomic databases

PaxDbiP77396.
PRIDEiP77396.

Protocols and materials databases

DNASUi946856.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75441; AAC75441; b2382.
BAA16252; BAA16252; BAA16252.
GeneIDi946856.
KEGGiecj:JW2379.
eco:b2382.
PATRICi32120143. VBIEscCol129921_2480.

Organism-specific databases

EchoBASEiEB3902.
EcoGeneiEG14150. ypdC.

Phylogenomic databases

eggNOGiENOG4108CIP. Bacteria.
ENOG410XTD9. LUCA.
HOGENOMiHOG000274763.
InParanoidiP77396.
OMAiHRPITRD.
OrthoDBiEOG6N946P.
PhylomeDBiP77396.

Enzyme and pathway databases

BioCyciEcoCyc:G7245-MONOMER.
ECOL316407:JW2379-MONOMER.

Miscellaneous databases

PROiP77396.

Family and domain databases

Gene3Di1.10.10.60. 2 hits.
InterProiIPR009057. Homeodomain-like.
IPR018060. HTH_AraC.
IPR018062. HTH_AraC-typ_CS.
IPR020449. Tscrpt_reg_HTH_AraC-type.
[Graphical view]
PfamiPF12833. HTH_18. 1 hit.
[Graphical view]
PRINTSiPR00032. HTHARAC.
SMARTiSM00342. HTH_ARAC. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 2 hits.
PROSITEiPS00041. HTH_ARAC_FAMILY_1. 1 hit.
PS01124. HTH_ARAC_FAMILY_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYPDC_ECOLI
AccessioniPrimary (citable) accession number: P77396
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 115 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.