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Protein

Uncharacterized HTH-type transcriptional regulator YpdC

Gene

ypdC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi200 – 219H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G7245-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YpdC
Gene namesi
Name:ypdC
Ordered Locus Names:b2382, JW2379
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi

Organism-specific databases

EcoGeneiEG14150 ypdC

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001946171 – 285Uncharacterized HTH-type transcriptional regulator YpdCAdd BLAST285

Proteomic databases

PaxDbiP77396
PRIDEiP77396

Interactioni

Protein-protein interaction databases

BioGridi4263009, 10 interactors
IntActiP77396, 8 interactors
STRINGi316385.ECDH10B_2547

Structurei

3D structure databases

ProteinModelPortaliP77396
SMRiP77396
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4108CIP Bacteria
ENOG410XTD9 LUCA
HOGENOMiHOG000274763
InParanoidiP77396
OMAiIPPNCWN
PhylomeDBiP77396

Family and domain databases

InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR018060 HTH_AraC
IPR018062 HTH_AraC-typ_CS
IPR020449 Tscrpt_reg_HTH_AraC-type
PfamiView protein in Pfam
PF12833 HTH_18, 1 hit
PRINTSiPR00032 HTHARAC
SMARTiView protein in SMART
SM00342 HTH_ARAC, 1 hit
SUPFAMiSSF46689 SSF46689, 2 hits
PROSITEiView protein in PROSITE
PS00041 HTH_ARAC_FAMILY_1, 1 hit
PS01124 HTH_ARAC_FAMILY_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77396-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKAPGLPADQ QFFADLFSGL VLNPQLLGRV WFASQPASLP VGSLCIDFPR
60 70 80 90 100
LDIVLRGEYG NLLEAKQQRL VEGEMLFIPA RAANLPVNNK PVMLLSLVFA
110 120 130 140 150
PTWLGLSFYD SRTTSLLHPA RQIQLPSLQR GEGEAMLTAL THLSRSPLEQ
160 170 180 190 200
NIIQPLVLSL LHLCRSVVNM PPGNSQPRGD FLYHSICNWV QDNYAQPLTR
210 220 230 240 250
ESVAQFFNIT PNHLSKLFAQ HGTMRFIEYV RWVRMAKARM ILQKYHLSIH
260 270 280
EVAQRCGFPD SDYFCRVFRR QFGLTPGEYS ARFQG
Length:285
Mass (Da):32,356
Last modified:February 1, 1997 - v1
Checksum:i6F6A2DCA15BA8E4D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75441.1
AP009048 Genomic DNA Translation: BAA16252.1
PIRiC65012
RefSeqiNP_416883.1, NC_000913.3
WP_000646835.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75441; AAC75441; b2382
BAA16252; BAA16252; BAA16252
GeneIDi946856
KEGGiecj:JW2379
eco:b2382
PATRICifig|1411691.4.peg.4346

Similar proteinsi

Entry informationi

Entry nameiYPDC_ECOLI
AccessioniPrimary (citable) accession number: P77396
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 128 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

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