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Protein

Inner membrane transport protein YdhP

Gene

ydhP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:B1657-MONOMER.
ECOL316407:JW1649-MONOMER.

Protein family/group databases

TCDBi2.A.1.2.65. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane transport protein YdhP
Gene namesi
Name:ydhP
Ordered Locus Names:b1657, JW1649
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13950. ydhP.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 6CytoplasmicSequence analysis6
Transmembranei7 – 27HelicalSequence analysisAdd BLAST21
Topological domaini28 – 43PeriplasmicSequence analysisAdd BLAST16
Transmembranei44 – 64HelicalSequence analysisAdd BLAST21
Topological domaini65 – 70CytoplasmicSequence analysis6
Transmembranei71 – 91HelicalSequence analysisAdd BLAST21
Topological domaini92 – 100PeriplasmicSequence analysis9
Transmembranei101 – 121HelicalSequence analysisAdd BLAST21
Topological domaini122 – 130CytoplasmicSequence analysis9
Transmembranei131 – 151HelicalSequence analysisAdd BLAST21
Topological domaini152 – 159PeriplasmicSequence analysis8
Transmembranei160 – 180HelicalSequence analysisAdd BLAST21
Topological domaini181 – 203CytoplasmicSequence analysisAdd BLAST23
Transmembranei204 – 224HelicalSequence analysisAdd BLAST21
Topological domaini225 – 236PeriplasmicSequence analysisAdd BLAST12
Transmembranei237 – 257HelicalSequence analysisAdd BLAST21
Topological domaini258 – 266CytoplasmicSequence analysis9
Transmembranei267 – 287HelicalSequence analysisAdd BLAST21
Topological domaini288 – 290PeriplasmicSequence analysis3
Transmembranei291 – 311HelicalSequence analysisAdd BLAST21
Topological domaini312 – 330CytoplasmicSequence analysisAdd BLAST19
Transmembranei331 – 351HelicalSequence analysisAdd BLAST21
Topological domaini352 – 356PeriplasmicSequence analysis5
Transmembranei357 – 377HelicalSequence analysisAdd BLAST21
Topological domaini378 – 389CytoplasmicSequence analysisAdd BLAST12

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001734021 – 389Inner membrane transport protein YdhPAdd BLAST389

Proteomic databases

PaxDbiP77389.
PRIDEiP77389.

Interactioni

Protein-protein interaction databases

BioGridi4260270. 170 interactors.
STRINGi511145.b1657.

Structurei

3D structure databases

ProteinModelPortaliP77389.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the major facilitator superfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105F27. Bacteria.
COG2814. LUCA.
HOGENOMiHOG000136927.
InParanoidiP77389.
KOiK19577.
OMAiRTPGRIN.
PhylomeDBiP77389.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77389-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKINYPLLAL AIGAFGIGTT EFSPMGLLPV IARGVDVSIP AAGMLISAYA
60 70 80 90 100
VGVMVGAPLM TLLLSHRARR SALIFLMAIF TLGNVLSAIA PDYMTLMLSR
110 120 130 140 150
ILTSLNHGAF FGLGSVVAAS VVPKHKQASA VATMFMGLTL ANIGGVPAAT
160 170 180 190 200
WLGETIGWRM SFLATAGLGV ISMVSLFFSL PKGGAGARPE VKKELAVLMR
210 220 230 240 250
PQVLSALLTT VLGAGAMFTL YTYISPVLQS ITHATPVFVT AMLVLIGVGF
260 270 280 290 300
SIGNYLGGKL ADRSVNGTLK GFLLLLMVIM LAIPFLARNE FGAAISMVVW
310 320 330 340 350
GAATFAVVPP LQMRVMRVAS EAPGLSSSVN IGAFNLGNAL GAAAGGAVIS
360 370 380
AGLGYSFVPV MGAIVAGLAL LLVFMSARKQ PETVCVANS
Length:389
Mass (Da):40,064
Last modified:February 1, 1997 - v1
Checksum:i90A6A22CBD565BF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74729.1.
AP009048 Genomic DNA. Translation: BAA15423.1.
PIRiC64923.
RefSeqiNP_416174.1. NC_000913.3.
WP_000701040.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74729; AAC74729; b1657.
BAA15423; BAA15423; BAA15423.
GeneIDi947340.
KEGGiecj:JW1649.
eco:b1657.
PATRICi32118618. VBIEscCol129921_1729.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74729.1.
AP009048 Genomic DNA. Translation: BAA15423.1.
PIRiC64923.
RefSeqiNP_416174.1. NC_000913.3.
WP_000701040.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77389.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260270. 170 interactors.
STRINGi511145.b1657.

Protein family/group databases

TCDBi2.A.1.2.65. the major facilitator superfamily (mfs).

Proteomic databases

PaxDbiP77389.
PRIDEiP77389.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74729; AAC74729; b1657.
BAA15423; BAA15423; BAA15423.
GeneIDi947340.
KEGGiecj:JW1649.
eco:b1657.
PATRICi32118618. VBIEscCol129921_1729.

Organism-specific databases

EchoBASEiEB3708.
EcoGeneiEG13950. ydhP.

Phylogenomic databases

eggNOGiENOG4105F27. Bacteria.
COG2814. LUCA.
HOGENOMiHOG000136927.
InParanoidiP77389.
KOiK19577.
OMAiRTPGRIN.
PhylomeDBiP77389.

Enzyme and pathway databases

BioCyciEcoCyc:B1657-MONOMER.
ECOL316407:JW1649-MONOMER.

Miscellaneous databases

PROiP77389.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR011701. MFS.
IPR020846. MFS_dom.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDHP_ECOLI
AccessioniPrimary (citable) accession number: P77389
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 16, 2002
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 117 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.