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Protein

UPF0098 protein YbcL

Gene

ybcL

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6301-MONOMER.
ECOL316407:JW0533-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0098 protein YbcL
Gene namesi
Name:ybcL
Ordered Locus Names:b0545, JW0533
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13628. ybcL.

Subcellular locationi

GO - Cellular componenti

  • outer membrane-bounded periplasmic space Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 21Add BLAST21
ChainiPRO_000003621222 – 183UPF0098 protein YbcLAdd BLAST162

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi46 ↔ 129

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP77368.
PRIDEiP77368.

Interactioni

Subunit structurei

Homodimer.1 Publication

Protein-protein interaction databases

BioGridi4262074. 12 interactors.
STRINGi511145.b0545.

Structurei

Secondary structure

1183
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi23 – 25Combined sources3
Helixi37 – 39Combined sources3
Beta strandi55 – 58Combined sources4
Beta strandi66 – 73Combined sources8
Beta strandi82 – 91Combined sources10
Turni99 – 102Combined sources4
Beta strandi121 – 124Combined sources4
Beta strandi140 – 147Combined sources8
Helixi159 – 167Combined sources9
Beta strandi170 – 176Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FUXX-ray1.81A/B22-183[»]
ProteinModelPortaliP77368.
SMRiP77368.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiP77368.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0098 family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4108V1U. Bacteria.
COG1881. LUCA.
HOGENOMiHOG000236247.
InParanoidiP77368.
KOiK06910.
OMAiQEGHPMA.
PhylomeDBiP77368.

Family and domain databases

CDDicd00865. PEBP_bact_arch. 1 hit.
Gene3Di3.90.280.10. 1 hit.
InterProiIPR008914. PEBP.
IPR005247. YbhB_YbcL.
[Graphical view]
PfamiPF01161. PBP. 1 hit.
[Graphical view]
SUPFAMiSSF49777. SSF49777. 1 hit.
TIGRFAMsiTIGR00481. TIGR00481. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77368-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTLIVSTVL AFITFSAQAA AFQVTSNEIK TGEQLTTSHV FSGFGCEGGN
60 70 80 90 100
TSPSLTWSGV PEGTKSFAVT VYDPDAPTGS GWWHWTVVNI PATVTYLPVD
110 120 130 140 150
AGRRDGTKLP TGAVQGRNDF GYAGFGGACP PKGDKPHHYQ FKVWALKTEK
160 170 180
IPVDSNSSGA LVGYMLNANK IATAEITPVY EIK
Length:183
Mass (Da):19,476
Last modified:February 1, 1997 - v1
Checksum:iFF60F20C9CF061A1
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40742.1.
U00096 Genomic DNA. Translation: AAC73646.1.
AP009048 Genomic DNA. Translation: BAE76320.1.
PIRiG64786.
RefSeqiNP_415077.1. NC_000913.3.
WP_001306955.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73646; AAC73646; b0545.
BAE76320; BAE76320; BAE76320.
GeneIDi945165.
KEGGiecj:JW0533.
eco:b0545.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40742.1.
U00096 Genomic DNA. Translation: AAC73646.1.
AP009048 Genomic DNA. Translation: BAE76320.1.
PIRiG64786.
RefSeqiNP_415077.1. NC_000913.3.
WP_001306955.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FUXX-ray1.81A/B22-183[»]
ProteinModelPortaliP77368.
SMRiP77368.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262074. 12 interactors.
STRINGi511145.b0545.

Proteomic databases

PaxDbiP77368.
PRIDEiP77368.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73646; AAC73646; b0545.
BAE76320; BAE76320; BAE76320.
GeneIDi945165.
KEGGiecj:JW0533.
eco:b0545.

Organism-specific databases

EchoBASEiEB3393.
EcoGeneiEG13628. ybcL.

Phylogenomic databases

eggNOGiENOG4108V1U. Bacteria.
COG1881. LUCA.
HOGENOMiHOG000236247.
InParanoidiP77368.
KOiK06910.
OMAiQEGHPMA.
PhylomeDBiP77368.

Enzyme and pathway databases

BioCyciEcoCyc:G6301-MONOMER.
ECOL316407:JW0533-MONOMER.

Miscellaneous databases

EvolutionaryTraceiP77368.
PROiP77368.

Family and domain databases

CDDicd00865. PEBP_bact_arch. 1 hit.
Gene3Di3.90.280.10. 1 hit.
InterProiIPR008914. PEBP.
IPR005247. YbhB_YbcL.
[Graphical view]
PfamiPF01161. PBP. 1 hit.
[Graphical view]
SUPFAMiSSF49777. SSF49777. 1 hit.
TIGRFAMsiTIGR00481. TIGR00481. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYBCL_ECOLI
AccessioniPrimary (citable) accession number: P77368
Secondary accession number(s): Q2MBN6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

Encoded by the cryptic lambdoid prophage DLP12.

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families
  4. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.