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Protein

Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR

Gene

ybdR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Cofactori

Zn2+By similarityNote: Binds 2 Zn2+ ions per subunit.By similarity

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi38 – 381Zinc 1; catalyticBy similarity
Metal bindingi60 – 601Zinc 1; catalyticBy similarity
Metal bindingi90 – 901Zinc 2By similarity
Metal bindingi93 – 931Zinc 2By similarity
Metal bindingi96 – 961Zinc 2By similarity
Metal bindingi104 – 1041Zinc 2By similarity

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Keywords - Ligandi

Metal-binding, Zinc

Enzyme and pathway databases

BioCyciEcoCyc:G6335-MONOMER.
ECOL316407:JW0601-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdR (EC:1.-.-.-)
Gene namesi
Name:ybdR
Ordered Locus Names:b0608, JW0601
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13537. ybdR.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 412412Uncharacterized zinc-type alcohol dehydrogenase-like protein YbdRPRO_0000160889Add
BLAST

Proteomic databases

PaxDbiP77316.
PRIDEiP77316.

Interactioni

Protein-protein interaction databases

BioGridi4259897. 4 interactions.
DIPiDIP-11355N.
IntActiP77316. 6 interactions.
STRINGi511145.b0608.

Structurei

3D structure databases

ProteinModelPortaliP77316.
SMRiP77316. Positions 1-387.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG4105E2A. Bacteria.
COG1063. LUCA.
HOGENOMiHOG000294694.
InParanoidiP77316.
OMAiQLRMGQC.
OrthoDBiEOG689HND.
PhylomeDBiP77316.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
3.90.180.10. 1 hit.
InterProiIPR013149. ADH_C.
IPR013154. ADH_N.
IPR027399. ADH_N_assoc.
IPR002085. ADH_SF_Zn-type.
IPR002328. ADH_Zn_CS.
IPR011032. GroES-like.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11695. PTHR11695. 3 hits.
PfamiPF08240. ADH_N. 1 hit.
PF13823. ADH_N_assoc. 1 hit.
PF00107. ADH_zinc_N. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
SSF51735. SSF51735. 1 hit.
PROSITEiPS00059. ADH_ZINC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77316-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKALTYHGPH HVQVENVPDP GVEQADDIIL RITATAICGS DLHLYRGKIP
60 70 80 90 100
QVKHGDIFGH EFMGEVVETG KDVKNLQKGD RVVIPFVIAC GDCFFCRLQQ
110 120 130 140 150
YAACENTNAG KGAALNKKQI PAPAALFGYS HLYGGVPGGQ AEYVRVPKGN
160 170 180 190 200
VGPFKVPPLL SDDKALFLSD ILPTAWQAAK NAQIQQGSSV AVYGAGPVGL
210 220 230 240 250
LTIACARLLG AEQIFVVDHH PYRLHFAADR YGAIPINFDE DSDPAQSIIE
260 270 280 290 300
QTAGHRGVDA VIDAVGFEAK GSTTETVLTN LKLEGSSGKA LRQCIAAVRR
310 320 330 340 350
GGIVSVPGVY AGFIHGFLFG DAFDKGLSFK MGQTHVHAWL GELLPLIEKG
360 370 380 390 400
LLKPEEIVTH YMPFEEAARG YEIFEKREEE CRKVILVPGA QSAEAAQKAV
410
SGLVNAMPGG TI
Length:412
Mass (Da):44,176
Last modified:February 1, 1997 - v1
Checksum:i966BB43A8FAB178D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40809.1.
U00096 Genomic DNA. Translation: AAC73709.1.
AP009048 Genomic DNA. Translation: BAA35238.1.
PIRiF64794.
RefSeqiNP_415141.1. NC_000913.3.
WP_000646173.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73709; AAC73709; b0608.
BAA35238; BAA35238; BAA35238.
GeneIDi949067.
KEGGiecj:JW0601.
eco:b0608.
PATRICi32116396. VBIEscCol129921_0638.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U82598 Genomic DNA. Translation: AAB40809.1.
U00096 Genomic DNA. Translation: AAC73709.1.
AP009048 Genomic DNA. Translation: BAA35238.1.
PIRiF64794.
RefSeqiNP_415141.1. NC_000913.3.
WP_000646173.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77316.
SMRiP77316. Positions 1-387.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259897. 4 interactions.
DIPiDIP-11355N.
IntActiP77316. 6 interactions.
STRINGi511145.b0608.

Proteomic databases

PaxDbiP77316.
PRIDEiP77316.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73709; AAC73709; b0608.
BAA35238; BAA35238; BAA35238.
GeneIDi949067.
KEGGiecj:JW0601.
eco:b0608.
PATRICi32116396. VBIEscCol129921_0638.

Organism-specific databases

EchoBASEiEB3307.
EcoGeneiEG13537. ybdR.

Phylogenomic databases

eggNOGiENOG4105E2A. Bacteria.
COG1063. LUCA.
HOGENOMiHOG000294694.
InParanoidiP77316.
OMAiQLRMGQC.
OrthoDBiEOG689HND.
PhylomeDBiP77316.

Enzyme and pathway databases

BioCyciEcoCyc:G6335-MONOMER.
ECOL316407:JW0601-MONOMER.

Miscellaneous databases

PROiP77316.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
3.90.180.10. 1 hit.
InterProiIPR013149. ADH_C.
IPR013154. ADH_N.
IPR027399. ADH_N_assoc.
IPR002085. ADH_SF_Zn-type.
IPR002328. ADH_Zn_CS.
IPR011032. GroES-like.
IPR016040. NAD(P)-bd_dom.
[Graphical view]
PANTHERiPTHR11695. PTHR11695. 3 hits.
PfamiPF08240. ADH_N. 1 hit.
PF13823. ADH_N_assoc. 1 hit.
PF00107. ADH_zinc_N. 1 hit.
[Graphical view]
SUPFAMiSSF50129. SSF50129. 1 hit.
SSF51735. SSF51735. 1 hit.
PROSITEiPS00059. ADH_ZINC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYBDR_ECOLI
AccessioniPrimary (citable) accession number: P77316
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: January 20, 2016
This is version 122 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.