Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Probable ABC transporter permease protein YphD

Gene

yphD

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system YphDEF. Probably responsible for the translocation of the substrate across the membrane.

GO - Molecular functioni

Keywordsi

Biological processTransport

Enzyme and pathway databases

BioCyciEcoCyc:YPHD-MONOMER

Protein family/group databases

TCDBi3.A.1.2.27 the atp-binding cassette (abc) superfamily

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ABC transporter permease protein YphD
Gene namesi
Name:yphD
Ordered Locus Names:b2546, JW2530
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13465 yphD

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei28 – 48HelicalSequence analysisAdd BLAST21
Transmembranei63 – 83HelicalSequence analysisAdd BLAST21
Transmembranei84 – 104HelicalSequence analysisAdd BLAST21
Transmembranei105 – 125HelicalSequence analysisAdd BLAST21
Transmembranei131 – 151HelicalSequence analysisAdd BLAST21
Transmembranei172 – 192HelicalSequence analysisAdd BLAST21
Transmembranei222 – 242HelicalSequence analysisAdd BLAST21
Transmembranei251 – 271HelicalSequence analysisAdd BLAST21
Transmembranei278 – 298HelicalSequence analysisAdd BLAST21
Transmembranei303 – 323HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

  • integral component of membrane Source: GO_Central
  • plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000602641 – 332Probable ABC transporter permease protein YphDAdd BLAST332

Proteomic databases

PaxDbiP77315
PRIDEiP77315

Interactioni

Protein-protein interaction databases

BioGridi4261317, 8 interactors
STRINGi316385.ECDH10B_2713

Structurei

3D structure databases

ProteinModelPortaliP77315
SMRiP77315
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105CNN Bacteria
COG1172 LUCA
HOGENOMiHOG000212232
InParanoidiP77315
KOiK02057
OMAiNTVVFQF
PhylomeDBiP77315

Family and domain databases

InterProiView protein in InterPro
IPR001851 ABC_transp_permease
PfamiView protein in Pfam
PF02653 BPD_transp_2, 1 hit

Sequencei

Sequence statusi: Complete.

P77315-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSASSLPLPQ GKSVSLKQFV SRHINEIGLL VVIAILYLVF SLNAPGFISL
60 70 80 90 100
NNQMNVLRDA ATIGIAAWAM TLIIISGEID VSVGPMVAFV SVCLAFLLQF
110 120 130 140 150
EVPLAVACLL VLLLGALMGT LAGVLRGVFN VPSFVATLGL WSALRGMGLF
160 170 180 190 200
MTNALPVPID ENEVLDWLGG QFLGVPVSAL IMIVLFALFV FISRKTAFGR
210 220 230 240 250
SVFAVGGNAT AAQLCGINVR RVRILIFTLS GLLAAVTGIL LAARLGSGNA
260 270 280 290 300
GAANGLEFDV IAAVVVGGTA LSGGRGSLFG TLLGVLVITL IGNGLVLLGI
310 320 330
NSFFQQVVRG VIIVVAVLAN ILLTQRSSKA KR
Length:332
Mass (Da):34,483
Last modified:February 1, 1997 - v1
Checksum:i226C21E6C6C2F719
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75599.1
AP009048 Genomic DNA Translation: BAA16448.1
PIRiA65032
RefSeqiNP_417041.1, NC_000913.3
WP_001276670.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75599; AAC75599; b2546
BAA16448; BAA16448; BAA16448
GeneIDi949063
KEGGiecj:JW2530
eco:b2546
PATRICifig|1411691.4.peg.4188

Similar proteinsi

Entry informationi

Entry nameiYPHD_ECOLI
AccessioniPrimary (citable) accession number: P77315
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 127 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health