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P77309

- YNEJ_ECOLI

UniProt

P77309 - YNEJ_ECOLI

Protein

Uncharacterized HTH-type transcriptional regulator YneJ

Gene

yneJ

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 105 (01 Oct 2014)
      Sequence version 1 (01 Feb 1997)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi18 – 3821H-T-H motifPROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    BioCyciEcoCyc:G6812-MONOMER.
    ECOL316407:JW1519-MONOMER.
    RETL1328306-WGS:GSTH-4822-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized HTH-type transcriptional regulator YneJ
    Gene namesi
    Name:yneJ
    Ordered Locus Names:b1526, JW1519
    OrganismiEscherichia coli (strain K12)
    Taxonomic identifieri83333 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

    Organism-specific databases

    EcoGeneiEG13818. yneJ.

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 293293Uncharacterized HTH-type transcriptional regulator YneJPRO_0000105808Add
    BLAST

    Proteomic databases

    PaxDbiP77309.
    PRIDEiP77309.

    Expressioni

    Gene expression databases

    GenevestigatoriP77309.

    Interactioni

    Protein-protein interaction databases

    IntActiP77309. 2 interactions.
    STRINGi511145.b1526.

    Structurei

    3D structure databases

    ProteinModelPortaliP77309.
    SMRiP77309. Positions 1-237.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini1 – 5858HTH lysR-typePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG0583.
    HOGENOMiHOG000233521.
    OMAiMPGTIHE.
    OrthoDBiEOG60652V.
    PhylomeDBiP77309.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    InterProiIPR005119. LysR_subst-bd.
    IPR000847. Tscrpt_reg_HTH_LysR.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF00126. HTH_1. 1 hit.
    PF03466. LysR_substrate. 1 hit.
    [Graphical view]
    PROSITEiPS50931. HTH_LYSR. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P77309-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDLTQLEMFN AVAEAGSITQ AAAKVHRVPS NLTTRLRQLE TELGVDLFIR    50
    ENQRLRLSPA GHNFLRYSQQ ILALVDEARS VVAGDEPQGL FSLGSLESTA 100
    AVRIPATLAE FNRRYPKIQF SLSTGPSGTM LDGVLEGKLN AAFIDGPINH 150
    TAIDGIPVYR EELMIVTPQG YAPVTRASQV NGSNIYAFRA NCSYRRHFES 200
    WFHADGAAPG TIHEMESYHG MLACVIAGAG IALIPRSMLE SMPGHHQVEA 250
    WPLAEQWRWL TTWLVWRRGA KTRPLEAFIQ LLDVPDSARQ GYQ 293
    Length:293
    Mass (Da):32,483
    Last modified:February 1, 1997 - v1
    Checksum:iF50C3F3237AD923B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00096 Genomic DNA. Translation: AAC74599.1.
    AP009048 Genomic DNA. Translation: BAA15209.1.
    PIRiA64907.
    RefSeqiNP_416043.1. NC_000913.3.
    YP_489789.1. NC_007779.1.

    Genome annotation databases

    EnsemblBacteriaiAAC74599; AAC74599; b1526.
    BAA15209; BAA15209; BAA15209.
    GeneIDi12932702.
    946079.
    KEGGiecj:Y75_p1501.
    eco:b1526.
    PATRICi32118350. VBIEscCol129921_1595.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00096 Genomic DNA. Translation: AAC74599.1 .
    AP009048 Genomic DNA. Translation: BAA15209.1 .
    PIRi A64907.
    RefSeqi NP_416043.1. NC_000913.3.
    YP_489789.1. NC_007779.1.

    3D structure databases

    ProteinModelPortali P77309.
    SMRi P77309. Positions 1-237.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P77309. 2 interactions.
    STRINGi 511145.b1526.

    Proteomic databases

    PaxDbi P77309.
    PRIDEi P77309.

    Protocols and materials databases

    DNASUi 946079.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAC74599 ; AAC74599 ; b1526 .
    BAA15209 ; BAA15209 ; BAA15209 .
    GeneIDi 12932702.
    946079.
    KEGGi ecj:Y75_p1501.
    eco:b1526.
    PATRICi 32118350. VBIEscCol129921_1595.

    Organism-specific databases

    EchoBASEi EB3579.
    EcoGenei EG13818. yneJ.

    Phylogenomic databases

    eggNOGi COG0583.
    HOGENOMi HOG000233521.
    OMAi MPGTIHE.
    OrthoDBi EOG60652V.
    PhylomeDBi P77309.

    Enzyme and pathway databases

    BioCyci EcoCyc:G6812-MONOMER.
    ECOL316407:JW1519-MONOMER.
    RETL1328306-WGS:GSTH-4822-MONOMER.

    Miscellaneous databases

    PROi P77309.

    Gene expression databases

    Genevestigatori P77309.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    InterProi IPR005119. LysR_subst-bd.
    IPR000847. Tscrpt_reg_HTH_LysR.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF00126. HTH_1. 1 hit.
    PF03466. LysR_substrate. 1 hit.
    [Graphical view ]
    PROSITEi PS50931. HTH_LYSR. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / MG1655 / ATCC 47076.
    3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
      Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
      Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

    Entry informationi

    Entry nameiYNEJ_ECOLI
    AccessioniPrimary (citable) accession number: P77309
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: February 1, 1997
    Last modified: October 1, 2014
    This is version 105 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Escherichia coli
      Escherichia coli (strain K12): entries and cross-references to EcoGene
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3