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Protein

Uncharacterized HTH-type transcriptional regulator YneJ

Gene

yneJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi18 – 3821H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6812-MONOMER.
ECOL316407:JW1519-MONOMER.
RETL1328306-WGS:GSTH-4822-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YneJ
Gene namesi
Name:yneJ
Ordered Locus Names:b1526, JW1519
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318 Componenti: Chromosome UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13818. yneJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 293293Uncharacterized HTH-type transcriptional regulator YneJPRO_0000105808Add
BLAST

Proteomic databases

PaxDbiP77309.
PRIDEiP77309.

Interactioni

Protein-protein interaction databases

IntActiP77309. 2 interactions.
STRINGi511145.b1526.

Structurei

3D structure databases

ProteinModelPortaliP77309.
SMRiP77309. Positions 1-237.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 5858HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0583.
HOGENOMiHOG000233521.
InParanoidiP77309.
OMAiIFEMESY.
OrthoDBiEOG60652V.
PhylomeDBiP77309.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77309-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDLTQLEMFN AVAEAGSITQ AAAKVHRVPS NLTTRLRQLE TELGVDLFIR
60 70 80 90 100
ENQRLRLSPA GHNFLRYSQQ ILALVDEARS VVAGDEPQGL FSLGSLESTA
110 120 130 140 150
AVRIPATLAE FNRRYPKIQF SLSTGPSGTM LDGVLEGKLN AAFIDGPINH
160 170 180 190 200
TAIDGIPVYR EELMIVTPQG YAPVTRASQV NGSNIYAFRA NCSYRRHFES
210 220 230 240 250
WFHADGAAPG TIHEMESYHG MLACVIAGAG IALIPRSMLE SMPGHHQVEA
260 270 280 290
WPLAEQWRWL TTWLVWRRGA KTRPLEAFIQ LLDVPDSARQ GYQ
Length:293
Mass (Da):32,483
Last modified:February 1, 1997 - v1
Checksum:iF50C3F3237AD923B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74599.1.
AP009048 Genomic DNA. Translation: BAA15209.1.
PIRiA64907.
RefSeqiNP_416043.1. NC_000913.3.

Genome annotation databases

EnsemblBacteriaiAAC74599; AAC74599; b1526.
BAA15209; BAA15209; BAA15209.
GeneIDi946079.
KEGGiecj:Y75_p1501.
eco:b1526.
PATRICi32118350. VBIEscCol129921_1595.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74599.1.
AP009048 Genomic DNA. Translation: BAA15209.1.
PIRiA64907.
RefSeqiNP_416043.1. NC_000913.3.

3D structure databases

ProteinModelPortaliP77309.
SMRiP77309. Positions 1-237.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiP77309. 2 interactions.
STRINGi511145.b1526.

Proteomic databases

PaxDbiP77309.
PRIDEiP77309.

Protocols and materials databases

DNASUi946079.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74599; AAC74599; b1526.
BAA15209; BAA15209; BAA15209.
GeneIDi946079.
KEGGiecj:Y75_p1501.
eco:b1526.
PATRICi32118350. VBIEscCol129921_1595.

Organism-specific databases

EchoBASEiEB3579.
EcoGeneiEG13818. yneJ.

Phylogenomic databases

eggNOGiCOG0583.
HOGENOMiHOG000233521.
InParanoidiP77309.
OMAiIFEMESY.
OrthoDBiEOG60652V.
PhylomeDBiP77309.

Enzyme and pathway databases

BioCyciEcoCyc:G6812-MONOMER.
ECOL316407:JW1519-MONOMER.
RETL1328306-WGS:GSTH-4822-MONOMER.

Miscellaneous databases

PROiP77309.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYNEJ_ECOLI
AccessioniPrimary (citable) accession number: P77309
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: June 24, 2015
This is version 109 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.