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P77309 (YNEJ_ECOLI) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 104. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized HTH-type transcriptional regulator YneJ
Gene names
Name:yneJ
Ordered Locus Names:b1526, JW1519
OrganismEscherichia coli (strain K12) [Reference proteome] [HAMAP]
Taxonomic identifier83333 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia

Protein attributes

Sequence length293 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH lysR-type DNA-binding domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 293293Uncharacterized HTH-type transcriptional regulator YneJ
PRO_0000105808

Regions

Domain1 – 5858HTH lysR-type
DNA binding18 – 3821H-T-H motif Potential

Sequences

Sequence LengthMass (Da)Tools
P77309 [UniParc].

Last modified February 1, 1997. Version 1.
Checksum: F50C3F3237AD923B

FASTA29332,483
        10         20         30         40         50         60 
MDLTQLEMFN AVAEAGSITQ AAAKVHRVPS NLTTRLRQLE TELGVDLFIR ENQRLRLSPA 

        70         80         90        100        110        120 
GHNFLRYSQQ ILALVDEARS VVAGDEPQGL FSLGSLESTA AVRIPATLAE FNRRYPKIQF 

       130        140        150        160        170        180 
SLSTGPSGTM LDGVLEGKLN AAFIDGPINH TAIDGIPVYR EELMIVTPQG YAPVTRASQV 

       190        200        210        220        230        240 
NGSNIYAFRA NCSYRRHFES WFHADGAAPG TIHEMESYHG MLACVIAGAG IALIPRSMLE 

       250        260        270        280        290 
SMPGHHQVEA WPLAEQWRWL TTWLVWRRGA KTRPLEAFIQ LLDVPDSARQ GYQ 

« Hide

References

[1]"A 570-kb DNA sequence of the Escherichia coli K-12 genome corresponding to the 28.0-40.1 min region on the linkage map."
Aiba H., Baba T., Fujita K., Hayashi K., Inada T., Isono K., Itoh T., Kasai H., Kashimoto K., Kimura S., Kitakawa M., Kitagawa M., Makino K., Miki T., Mizobuchi K., Mori H., Mori T., Motomura K. expand/collapse author list , Nakade S., Nakamura Y., Nashimoto H., Nishio Y., Oshima T., Saito N., Sampei G., Seki Y., Sivasundaram S., Tagami H., Takeda J., Takemoto K., Takeuchi Y., Wada C., Yamamoto Y., Horiuchi T.
DNA Res. 3:363-377(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
[2]"The complete genome sequence of Escherichia coli K-12."
Blattner F.R., Plunkett G. III, Bloch C.A., Perna N.T., Burland V., Riley M., Collado-Vides J., Glasner J.D., Rode C.K., Mayhew G.F., Gregor J., Davis N.W., Kirkpatrick H.A., Goeden M.A., Rose D.J., Mau B., Shao Y.
Science 277:1453-1462(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / MG1655 / ATCC 47076.
[3]"Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00096 Genomic DNA. Translation: AAC74599.1.
AP009048 Genomic DNA. Translation: BAA15209.1.
PIRA64907.
RefSeqNP_416043.1. NC_000913.3.
YP_489789.1. NC_007779.1.

3D structure databases

ProteinModelPortalP77309.
SMRP77309. Positions 1-237.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

IntActP77309. 2 interactions.
STRING511145.b1526.

Proteomic databases

PaxDbP77309.
PRIDEP77309.

Protocols and materials databases

DNASU946079.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAC74599; AAC74599; b1526.
BAA15209; BAA15209; BAA15209.
GeneID12932702.
946079.
KEGGecj:Y75_p1501.
eco:b1526.
PATRIC32118350. VBIEscCol129921_1595.

Organism-specific databases

EchoBASEEB3579.
EcoGeneEG13818. yneJ.

Phylogenomic databases

eggNOGCOG0583.
HOGENOMHOG000233521.
OMAMPGTIHE.
OrthoDBEOG60652V.
PhylomeDBP77309.

Enzyme and pathway databases

BioCycEcoCyc:G6812-MONOMER.
ECOL316407:JW1519-MONOMER.
RETL1328306-WGS:GSTH-4822-MONOMER.

Gene expression databases

GenevestigatorP77309.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PROSITEPS50931. HTH_LYSR. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

PROP77309.

Entry information

Entry nameYNEJ_ECOLI
AccessionPrimary (citable) accession number: P77309
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: July 9, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Escherichia coli

Escherichia coli (strain K12): entries and cross-references to EcoGene