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P77309

- YNEJ_ECOLI

UniProt

P77309 - YNEJ_ECOLI

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Protein

Uncharacterized HTH-type transcriptional regulator YneJ

Gene

yneJ

Organism
Escherichia coli (strain K12)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi18 – 3821H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciEcoCyc:G6812-MONOMER.
ECOL316407:JW1519-MONOMER.
RETL1328306-WGS:GSTH-4822-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YneJ
Gene namesi
Name:yneJ
Ordered Locus Names:b1526, JW1519
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
ProteomesiUP000000318: Chromosome, UP000000625: Chromosome

Organism-specific databases

EcoGeneiEG13818. yneJ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 293293Uncharacterized HTH-type transcriptional regulator YneJPRO_0000105808Add
BLAST

Proteomic databases

PaxDbiP77309.
PRIDEiP77309.

Expressioni

Gene expression databases

GenevestigatoriP77309.

Interactioni

Protein-protein interaction databases

IntActiP77309. 2 interactions.
STRINGi511145.b1526.

Structurei

3D structure databases

ProteinModelPortaliP77309.
SMRiP77309. Positions 1-237.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 5858HTH lysR-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH lysR-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG0583.
HOGENOMiHOG000233521.
InParanoidiP77309.
OMAiMPGTIHE.
OrthoDBiEOG60652V.
PhylomeDBiP77309.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view]
PROSITEiPS50931. HTH_LYSR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77309-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MDLTQLEMFN AVAEAGSITQ AAAKVHRVPS NLTTRLRQLE TELGVDLFIR
60 70 80 90 100
ENQRLRLSPA GHNFLRYSQQ ILALVDEARS VVAGDEPQGL FSLGSLESTA
110 120 130 140 150
AVRIPATLAE FNRRYPKIQF SLSTGPSGTM LDGVLEGKLN AAFIDGPINH
160 170 180 190 200
TAIDGIPVYR EELMIVTPQG YAPVTRASQV NGSNIYAFRA NCSYRRHFES
210 220 230 240 250
WFHADGAAPG TIHEMESYHG MLACVIAGAG IALIPRSMLE SMPGHHQVEA
260 270 280 290
WPLAEQWRWL TTWLVWRRGA KTRPLEAFIQ LLDVPDSARQ GYQ
Length:293
Mass (Da):32,483
Last modified:February 1, 1997 - v1
Checksum:iF50C3F3237AD923B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00096 Genomic DNA. Translation: AAC74599.1.
AP009048 Genomic DNA. Translation: BAA15209.1.
PIRiA64907.
RefSeqiNP_416043.1. NC_000913.3.
YP_489789.1. NC_007779.1.

Genome annotation databases

EnsemblBacteriaiAAC74599; AAC74599; b1526.
BAA15209; BAA15209; BAA15209.
GeneIDi12932702.
946079.
KEGGiecj:Y75_p1501.
eco:b1526.
PATRICi32118350. VBIEscCol129921_1595.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00096 Genomic DNA. Translation: AAC74599.1 .
AP009048 Genomic DNA. Translation: BAA15209.1 .
PIRi A64907.
RefSeqi NP_416043.1. NC_000913.3.
YP_489789.1. NC_007779.1.

3D structure databases

ProteinModelPortali P77309.
SMRi P77309. Positions 1-237.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

IntActi P77309. 2 interactions.
STRINGi 511145.b1526.

Proteomic databases

PaxDbi P77309.
PRIDEi P77309.

Protocols and materials databases

DNASUi 946079.
Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAC74599 ; AAC74599 ; b1526 .
BAA15209 ; BAA15209 ; BAA15209 .
GeneIDi 12932702.
946079.
KEGGi ecj:Y75_p1501.
eco:b1526.
PATRICi 32118350. VBIEscCol129921_1595.

Organism-specific databases

EchoBASEi EB3579.
EcoGenei EG13818. yneJ.

Phylogenomic databases

eggNOGi COG0583.
HOGENOMi HOG000233521.
InParanoidi P77309.
OMAi MPGTIHE.
OrthoDBi EOG60652V.
PhylomeDBi P77309.

Enzyme and pathway databases

BioCyci EcoCyc:G6812-MONOMER.
ECOL316407:JW1519-MONOMER.
RETL1328306-WGS:GSTH-4822-MONOMER.

Miscellaneous databases

PROi P77309.

Gene expression databases

Genevestigatori P77309.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
InterProi IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
[Graphical view ]
PROSITEi PS50931. HTH_LYSR. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYNEJ_ECOLI
AccessioniPrimary (citable) accession number: P77309
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: October 29, 2014
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3