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Protein

Uncharacterized HTH-type transcriptional regulator YagI

Gene

yagI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi25 – 45H-T-H motifPROSITE-ProRule annotationAdd BLAST21

GO - Molecular functioni

GO - Biological processi

  • negative regulation of transcription, DNA-templated Source: GO_Central
  • single-species biofilm formation Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6144-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YagI
Gene namesi
Name:yagI
Ordered Locus Names:b0272, JW0265
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13349 yagI

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002017691 – 252Uncharacterized HTH-type transcriptional regulator YagIAdd BLAST252

Proteomic databases

PaxDbiP77300
PRIDEiP77300

Interactioni

Protein-protein interaction databases

BioGridi42614988 interactors.
IntActiP77300 5 interactors.
STRINGi316407.85674416

Structurei

3D structure databases

ProteinModelPortaliP77300
SMRiP77300
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 66HTH iclR-typePROSITE-ProRule annotationAdd BLAST63
Domaini81 – 250IclR-EDPROSITE-ProRule annotationAdd BLAST170

Phylogenomic databases

eggNOGiENOG4107HP6 Bacteria
COG1414 LUCA
HOGENOMiHOG000107041
InParanoidiP77300
OMAiAICVCGP
PhylomeDBiP77300

Family and domain databases

Gene3Di1.10.10.101 hit
3.30.450.401 hit
InterProiView protein in InterPro
IPR029016 GAF-like_dom_sf
IPR014757 Tscrpt_reg_IclR_C
IPR005471 Tscrpt_reg_IclR_N
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF09339 HTH_IclR, 1 hit
PF01614 IclR, 1 hit
SMARTiView protein in SMART
SM00346 HTH_ICLR, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS51077 HTH_ICLR, 1 hit
PS51078 ICLR_ED, 1 hit

Sequencei

Sequence statusi: Complete.

P77300-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPIIQSVERA LQILDLFNEQ ATELKITDIS KLMGLSKSTL HSLLKTLQLH
60 70 80 90 100
GYIDQNPENG KYRLGMKLVE RGHFVVGSID IRQKAKGWLT ELSRRTGQTT
110 120 130 140 150
HLGILDGREG VYIEKIEGKL AAIAYSRIGR RLPVHATAIG KVLIAWLGEA
160 170 180 190 200
ELNALLEGYQ YTTFTPATLA SREALMSALA QTREQGYALD SEENEQGVRC
210 220 230 240 250
VAVPVWNHES RVIAALSLST LTSRVDDAEL ANFREQLQQA GLALSRALGY

PA
Length:252
Mass (Da):27,838
Last modified:February 1, 1997 - v1
Checksum:i8FF297AE8FF2E435
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA Translation: AAB08693.1
U00096 Genomic DNA Translation: AAC73375.1
AP009048 Genomic DNA Translation: BAE76056.1
PIRiH64752
RefSeqiNP_414806.1, NC_000913.3
WP_001121657.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC73375; AAC73375; b0272
BAE76056; BAE76056; BAE76056
GeneIDi945016
KEGGiecj:JW0265
eco:b0272
PATRICifig|1411691.4.peg.2008

Similar proteinsi

Entry informationi

Entry nameiYAGI_ECOLI
AccessioniPrimary (citable) accession number: P77300
Secondary accession number(s): Q2MCF0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 1, 1997
Last modified: March 28, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome