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Protein

Uncharacterized fimbrial-like protein YdeR

Gene

ydeR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G6793-MONOMER.
ECOL316407:JW1497-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized fimbrial-like protein YdeR
Gene namesi
Name:ydeR
Ordered Locus Names:b1503, JW1497
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13800. ydeR.

Subcellular locationi

GO - Cellular componenti

  • pilus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Fimbrium

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 23Sequence analysisAdd BLAST23
ChainiPRO_000000925824 – 167Uncharacterized fimbrial-like protein YdeRAdd BLAST144

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi39 ↔ 77Curated

Keywords - PTMi

Disulfide bond

Proteomic databases

PaxDbiP77294.
PRIDEiP77294.

Interactioni

Protein-protein interaction databases

BioGridi4261138. 11 interactors.
DIPiDIP-11685N.
STRINGi511145.b1503.

Structurei

3D structure databases

ProteinModelPortaliP77294.
SMRiP77294.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the fimbrial protein family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4106318. Bacteria.
ENOG4112C98. LUCA.
HOGENOMiHOG000260127.
InParanoidiP77294.
OMAiYYKNEGS.
PhylomeDBiP77294.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77294-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRLHKRFLL ATFCALFTAT LQAADVTITV NGRVVAKPCT IQTKEANVNL
60 70 80 90 100
GDLYTRNLQQ PGSASGWHNI TLSLTDCPVE TSAVTAIVTG STDNTGYYKN
110 120 130 140 150
EGTAENIQIE LRDDQDAALK NGDSKTVIVD EITRNAQFPL KARAITVNGN
160
ASQGTIEALI NVIYTWQ
Length:167
Mass (Da):18,144
Last modified:February 1, 1997 - v1
Checksum:i04A3E59C494759F2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74576.1.
AP009048 Genomic DNA. Translation: BAA15176.1.
PIRiB64904.
RefSeqiNP_416020.1. NC_000913.3.
WP_000825452.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74576; AAC74576; b1503.
BAA15176; BAA15176; BAA15176.
GeneIDi946049.
KEGGiecj:JW1497.
eco:b1503.
PATRICi32118300. VBIEscCol129921_1570.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74576.1.
AP009048 Genomic DNA. Translation: BAA15176.1.
PIRiB64904.
RefSeqiNP_416020.1. NC_000913.3.
WP_000825452.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77294.
SMRiP77294.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261138. 11 interactors.
DIPiDIP-11685N.
STRINGi511145.b1503.

Proteomic databases

PaxDbiP77294.
PRIDEiP77294.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74576; AAC74576; b1503.
BAA15176; BAA15176; BAA15176.
GeneIDi946049.
KEGGiecj:JW1497.
eco:b1503.
PATRICi32118300. VBIEscCol129921_1570.

Organism-specific databases

EchoBASEiEB3561.
EcoGeneiEG13800. ydeR.

Phylogenomic databases

eggNOGiENOG4106318. Bacteria.
ENOG4112C98. LUCA.
HOGENOMiHOG000260127.
InParanoidiP77294.
OMAiYYKNEGS.
PhylomeDBiP77294.

Enzyme and pathway databases

BioCyciEcoCyc:G6793-MONOMER.
ECOL316407:JW1497-MONOMER.

Miscellaneous databases

PROiP77294.

Family and domain databases

Gene3Di2.60.40.1090. 1 hit.
InterProiIPR008966. Adhesion_dom.
IPR000259. Adhesion_dom_fimbrial.
[Graphical view]
SUPFAMiSSF49401. SSF49401. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiYDER_ECOLI
AccessioniPrimary (citable) accession number: P77294
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 27, 2001
Last sequence update: February 1, 1997
Last modified: November 2, 2016
This is version 107 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.