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Protein

ABC transporter periplasmic-binding protein YphF

Gene

yphF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Probably part of the binding-protein-dependent transport system YphDEF.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciEcoCyc:G7342-MONOMER.
ECOL316407:JW2532-MONOMER.

Protein family/group databases

TCDBi3.A.1.2.27. the atp-binding cassette (abc) superfamily.

Names & Taxonomyi

Protein namesi
Recommended name:
ABC transporter periplasmic-binding protein YphF
Gene namesi
Name:yphF
Ordered Locus Names:b2548, JW2532
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13467. yphF.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 26261 PublicationAdd
BLAST
Chaini27 – 327301ABC transporter periplasmic-binding protein YphFPRO_0000031744Add
BLAST

Proteomic databases

PaxDbiP77269.
PRIDEiP77269.

Interactioni

Protein-protein interaction databases

BioGridi4261316. 32 interactions.
IntActiP77269. 3 interactions.
STRINGi511145.b2548.

Structurei

3D structure databases

ProteinModelPortaliP77269.
SMRiP77269. Positions 43-295.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiENOG4105FCA. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000078217.
KOiK02058.
OMAiKGGDKYV.
OrthoDBiEOG6DG2Q4.
PhylomeDBiP77269.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P77269-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTKMRTTRN LLLMATLLGS ALFARAAEKE MTIGAIYLDT QGYYAGVRQG
60 70 80 90 100
VQDAAKDSSV QVQLIETNAQ GDISKESTFV DTLVARNVDA IILSAVSENG
110 120 130 140 150
SSRTVRRASE AGIPVICYNT CINQKGVDKY VSAYLVGDPL EFGKKLGNAA
160 170 180 190 200
ADYFIANKID QPKIAVINCE AFEVCVQRRK GFEEVLKSRV PGAQIVANQE
210 220 230 240 250
GTVLDKAISV GEKLIISTPD LNAIMGESGG ATLGAVKAVR NQNQAGKIAV
260 270 280 290 300
FGSDMTTEIA QELENNQVLK AVVDISGKKM GNAVFAQTLK VINKQADGEK
310 320
VIQVPIDLYT KTEDGKQWLA THVDGLP
Length:327
Mass (Da):35,058
Last modified:February 1, 1997 - v1
Checksum:i3182BC4494FFC766
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75601.1.
AP009048 Genomic DNA. Translation: BAA16457.1.
PIRiC65032.
RefSeqiNP_417043.1. NC_000913.3.
WP_001142427.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75601; AAC75601; b2548.
BAA16457; BAA16457; BAA16457.
GeneIDi947020.
KEGGiecj:JW2532.
eco:b2548.
PATRICi32120493. VBIEscCol129921_2649.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75601.1.
AP009048 Genomic DNA. Translation: BAA16457.1.
PIRiC65032.
RefSeqiNP_417043.1. NC_000913.3.
WP_001142427.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77269.
SMRiP77269. Positions 43-295.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4261316. 32 interactions.
IntActiP77269. 3 interactions.
STRINGi511145.b2548.

Protein family/group databases

TCDBi3.A.1.2.27. the atp-binding cassette (abc) superfamily.

Proteomic databases

PaxDbiP77269.
PRIDEiP77269.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75601; AAC75601; b2548.
BAA16457; BAA16457; BAA16457.
GeneIDi947020.
KEGGiecj:JW2532.
eco:b2548.
PATRICi32120493. VBIEscCol129921_2649.

Organism-specific databases

EchoBASEiEB3240.
EcoGeneiEG13467. yphF.

Phylogenomic databases

eggNOGiENOG4105FCA. Bacteria.
COG1879. LUCA.
HOGENOMiHOG000078217.
KOiK02058.
OMAiKGGDKYV.
OrthoDBiEOG6DG2Q4.
PhylomeDBiP77269.

Enzyme and pathway databases

BioCyciEcoCyc:G7342-MONOMER.
ECOL316407:JW2532-MONOMER.

Miscellaneous databases

PROiP77269.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Construction of a contiguous 874-kb sequence of the Escherichia coli-K12 genome corresponding to 50.0-68.8 min on the linkage map and analysis of its sequence features."
    Yamamoto Y., Aiba H., Baba T., Hayashi K., Inada T., Isono K., Itoh T., Kimura S., Kitagawa M., Makino K., Miki T., Mitsuhashi N., Mizobuchi K., Mori H., Nakade S., Nakamura Y., Nashimoto H., Oshima T.
    , Oyama S., Saito N., Sampei G., Satoh Y., Sivasundaram S., Tagami H., Takahashi H., Takeda J., Takemoto K., Uehara K., Wada C., Yamagata S., Horiuchi T.
    DNA Res. 4:91-113(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  4. "Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12."
    Link A.J., Robison K., Church G.M.
    Electrophoresis 18:1259-1313(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: PROTEIN SEQUENCE OF 27-37.
    Strain: K12 / EMG2.

Entry informationi

Entry nameiYPHF_ECOLI
AccessioniPrimary (citable) accession number: P77269
Secondary accession number(s): P76994
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: April 13, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Direct protein sequencing, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.