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Protein

Putative inner membrane metabolite transport protein YdfJ

Gene

ydfJ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Biological processi

Symport, Transport

Enzyme and pathway databases

BioCyciEcoCyc:B1543-MONOMER.
ECOL316407:JW1536-MONOMER.

Protein family/group databases

TCDBi2.A.1.6.9. the major facilitator superfamily (mfs).

Names & Taxonomyi

Protein namesi
Recommended name:
Putative inner membrane metabolite transport protein YdfJ
Gene namesi
Name:ydfJ
Ordered Locus Names:b4600, JW1536
ORF Names:b1543
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13822. ydfJ.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 77CytoplasmicSequence analysis
Transmembranei8 – 2821Helical; Name=1Sequence analysisAdd
BLAST
Transmembranei29 – 4921Helical; Name=2Sequence analysisAdd
BLAST
Topological domaini50 – 7425CytoplasmicSequence analysisAdd
BLAST
Transmembranei75 – 9521Helical; Name=3Sequence analysisAdd
BLAST
Topological domaini96 – 972PeriplasmicSequence analysis
Transmembranei98 – 11821Helical; Name=4Sequence analysisAdd
BLAST
Topological domaini119 – 13214CytoplasmicSequence analysisAdd
BLAST
Transmembranei133 – 15321Helical; Name=5Sequence analysisAdd
BLAST
Topological domaini154 – 1574PeriplasmicSequence analysis
Transmembranei158 – 17821Helical; Name=6Sequence analysisAdd
BLAST
Topological domaini179 – 22547CytoplasmicSequence analysisAdd
BLAST
Transmembranei226 – 24621Helical; Name=7Sequence analysisAdd
BLAST
Topological domaini247 – 2515PeriplasmicSequence analysis
Transmembranei252 – 27221Helical; Name=8Sequence analysisAdd
BLAST
Topological domaini273 – 2797CytoplasmicSequence analysis
Transmembranei280 – 30021Helical; Name=9Sequence analysisAdd
BLAST
Topological domaini301 – 3077PeriplasmicSequence analysis
Transmembranei308 – 32821Helical; Name=10Sequence analysisAdd
BLAST
Topological domaini329 – 35123CytoplasmicSequence analysisAdd
BLAST
Transmembranei352 – 37221Helical; Name=11Sequence analysisAdd
BLAST
Topological domaini373 – 3731PeriplasmicSequence analysis
Transmembranei374 – 39421Helical; Name=12Sequence analysisAdd
BLAST
Topological domaini395 – 42733CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of membrane Source: UniProtKB-KW
  • plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 427427Putative inner membrane metabolite transport protein YdfJPRO_0000050482Add
BLAST

Interactioni

Protein-protein interaction databases

BioGridi4260215. 133 interactions.
DIPiDIP-11699N.
IntActiP77228. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliP77228.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000141613.
InParanoidiP77228.
KOiK08173.
OMAiEMFGSRN.
PhylomeDBiP77228.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR004736. Cit_H_symport.
IPR011701. MFS.
IPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
PF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
TIGRFAMsiTIGR00883. 2A0106. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77228-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDFQLYSLGA ALVFHEIFFP ESSTAMALIL AMGTYGAGYV ARIVGAFIFG
60 70 80 90 100
KMGDRIGRKK VLFITITMMG ICTTLIGVLP TYAQIGVFAP ILLVTLRIIQ
110 120 130 140 150
GLGAGAEISG AGTMLAEYAP KGKRGIISSF VAMGTNCGTL SATAIWAFMF
160 170 180 190 200
FILSKEELLA WGWRIPFLAS VVVMVFAIWL RMNLKESPVF EKVNDSNQPT
210 220 230 240 250
AKPAPAGSMF QSKSFWLATG LRFGQAGNSG LIQTFLAGYL VQTLLFNKAI
260 270 280 290 300
PTDALMISSI LGFMTIPFLG WLSDKIGRRI PYIIMNTSAI VLAWPMLSII
310 320 330 340 350
VDKSYAPSTI MVALIVIHNC AVLGLFALEN ITMAEMFGCK NRFTRMAISK
360 370 380 390 400
EIGGLIASGF GPILAGIFCT MTESWYPIAI MIMAYSVIGL ISALKMPEVK
410 420
DRDLSALEDA AEDQPRVVRA AQPSRSL
Length:427
Mass (Da):46,267
Last modified:February 1, 1997 - v1
Checksum:iA15C00B8E2DCBD9B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15248.1.
PIRiB64909.
RefSeqiWP_000347482.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiBAA15248; BAA15248; BAA15248.
KEGGiecj:JW1536.
PATRICi48662404. VBIEscCol107702_1563.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. Translation: BAA15248.1.
PIRiB64909.
RefSeqiWP_000347482.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77228.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4260215. 133 interactions.
DIPiDIP-11699N.
IntActiP77228. 1 interaction.

Protein family/group databases

TCDBi2.A.1.6.9. the major facilitator superfamily (mfs).

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA15248; BAA15248; BAA15248.
KEGGiecj:JW1536.
PATRICi48662404. VBIEscCol107702_1563.

Organism-specific databases

EchoBASEiEB3583.
EcoGeneiEG13822. ydfJ.

Phylogenomic databases

HOGENOMiHOG000141613.
InParanoidiP77228.
KOiK08173.
OMAiEMFGSRN.
PhylomeDBiP77228.

Enzyme and pathway databases

BioCyciEcoCyc:B1543-MONOMER.
ECOL316407:JW1536-MONOMER.

Family and domain databases

CDDicd06174. MFS. 1 hit.
InterProiIPR004736. Cit_H_symport.
IPR011701. MFS.
IPR020846. MFS_dom.
IPR005828. MFS_sugar_transport_like.
[Graphical view]
PfamiPF07690. MFS_1. 1 hit.
PF00083. Sugar_tr. 1 hit.
[Graphical view]
SUPFAMiSSF103473. SSF103473. 1 hit.
TIGRFAMsiTIGR00883. 2A0106. 1 hit.
PROSITEiPS50850. MFS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYDFJ_ECOLI
AccessioniPrimary (citable) accession number: P77228
Secondary accession number(s): P76884
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: February 1, 1997
Last modified: September 7, 2016
This is version 126 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.