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Protein

UPF0380 protein YafZ

Gene

yafZ

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:G6127-MONOMER.
ECOL316407:JW0242-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0380 protein YafZ
Gene namesi
Name:yafZ
Ordered Locus Names:b0252, JW0242
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13338. yafZ.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 273273UPF0380 protein YafZPRO_0000168546Add
BLAST

Proteomic databases

PaxDbiP77206.

Interactioni

Protein-protein interaction databases

BioGridi4259526. 176 interactions.
DIPiDIP-11229N.
IntActiP77206. 3 interactions.
STRINGi511145.b0252.

Structurei

3D structure databases

ProteinModelPortaliP77206.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0380 family.Curated

Phylogenomic databases

eggNOGiENOG4106H6R. Bacteria.
ENOG410XPYV. LUCA.
HOGENOMiHOG000222632.
OMAiKRAQTRA.
OrthoDBiEOG61KBFD.
PhylomeDBiP77206.

Family and domain databases

InterProiIPR026325. DUF932.
[Graphical view]
PfamiPF06067. DUF932. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77206-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTRLASRFGA ANLIRRDRPL TREELFRVVP SVFSEDKHES RSERYTYIPT
60 70 80 90 100
ISLLDSLQRE GFQPFFACQT RVRDPGRREH TKHMLRLRRE GQITGKQVPE
110 120 130 140 150
IILLNSHDGT SSYQMLPGLF RAVCQNGLVC GESFGEVRVP HKGDVVSQVI
160 170 180 190 200
EGAYEVLGIF DRVEEKRDAM QSLLLPPPAQ QALAKAALTY RFGEDHQPVT
210 220 230 240 250
ESQILSPRRW QDESNDLWTT YQRIQENLIK GGLSGRNAKG GRSHTRAVRG
260 270
IDGDVKLNRA LWVMAEALLT QLQ
Length:273
Mass (Da):31,051
Last modified:July 11, 2001 - v2
Checksum:i3BD5301F88159B2C
GO

Sequence cautioni

The sequence AAB08671.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA. Translation: AAB08671.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73355.2.
AP009048 Genomic DNA. Translation: BAA77921.1.
PIRiD64750.
RefSeqiNP_414786.4. NC_000913.3.
WP_000197389.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC73355; AAC73355; b0252.
BAA77921; BAA77921; BAA77921.
GeneIDi945373.
KEGGiecj:JW0242.
eco:b0252.
PATRICi32115623. VBIEscCol129921_0255.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA. Translation: AAB08671.1. Different initiation.
U00096 Genomic DNA. Translation: AAC73355.2.
AP009048 Genomic DNA. Translation: BAA77921.1.
PIRiD64750.
RefSeqiNP_414786.4. NC_000913.3.
WP_000197389.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP77206.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259526. 176 interactions.
DIPiDIP-11229N.
IntActiP77206. 3 interactions.
STRINGi511145.b0252.

Proteomic databases

PaxDbiP77206.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC73355; AAC73355; b0252.
BAA77921; BAA77921; BAA77921.
GeneIDi945373.
KEGGiecj:JW0242.
eco:b0252.
PATRICi32115623. VBIEscCol129921_0255.

Organism-specific databases

EchoBASEiEB3122.
EcoGeneiEG13338. yafZ.

Phylogenomic databases

eggNOGiENOG4106H6R. Bacteria.
ENOG410XPYV. LUCA.
HOGENOMiHOG000222632.
OMAiKRAQTRA.
OrthoDBiEOG61KBFD.
PhylomeDBiP77206.

Enzyme and pathway databases

BioCyciEcoCyc:G6127-MONOMER.
ECOL316407:JW0242-MONOMER.

Miscellaneous databases

PROiP77206.

Family and domain databases

InterProiIPR026325. DUF932.
[Graphical view]
PfamiPF06067. DUF932. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Systematic sequencing of the Escherichia coli genome: analysis of the 4.0 - 6.0 min (189,987 - 281,416bp) region."
    Takemoto K., Mori H., Murayama N., Kataoka K., Yano M., Itoh T., Yamamoto Y., Inokuchi H., Miki T., Hatada E., Fukuda R., Ichihara S., Mizuno T., Makino K., Nakata A., Yura T., Sampei G., Mizobuchi K.
    Submitted (FEB-1996) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  2. "Sequence of minutes 4-25 of Escherichia coli."
    Chung E., Allen E., Araujo R., Aparicio A.M., Davis K., Duncan M., Federspiel N., Hyman R., Kalman S., Komp C., Kurdi O., Lew H., Lin D., Namath A., Oefner P., Roberts D., Schramm S., Davis R.W.
    Submitted (JAN-1997) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  4. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.

Entry informationi

Entry nameiYAFZ_ECOLI
AccessioniPrimary (citable) accession number: P77206
Secondary accession number(s): Q47686, Q9R2D7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: July 11, 2001
Last modified: April 13, 2016
This is version 91 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.