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Protein

Putative protein LomR

Gene

lomR

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Names & Taxonomyi

Protein namesi
Recommended name:
Putative protein LomR
Gene namesi
Name:lomR
Ordered Locus Names:b4570, JW5884/JW5904
ORF Names:b1369/b1371
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14315. lomR.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002702071 – 164Putative protein LomRAdd BLAST164

Interactioni

Protein-protein interaction databases

DIPiDIP-48047N.

Structurei

3D structure databases

ProteinModelPortaliP77184.
SMRiP77184.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the Ail/OmpX/PagC/Lom family.Curated

Family and domain databases

Gene3Di2.40.160.20. 2 hits.
InterProiIPR000758. Enterovir_OMP.
IPR011250. OMP/PagP_b-brl.
[Graphical view]
PfamiPF06316. Ail_Lom. 2 hits.
[Graphical view]
PRINTSiPR00316. ENTEROVIROMP.
SUPFAMiSSF56925. SSF56925. 2 hits.
PROSITEiPS00695. ENT_VIR_OMP_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P77184-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRNRWFSVMV GPSVRVNEWF SAYAMAGMAY SRVSTFSGDY LRVTDNKGKT
60 70 80 90 100
HDVLTGSDDG RHSNTSLAWG AGVQFNPTES VAIDIAYEGP GSGDWRTDGF
110 120 130 140 150
IVGVGYKFML TGSDDGRHSN TSLAWGAGVQ FNPTESVAID IAYEGPGSGD
160
WRTDGFIVGV GYKF
Length:164
Mass (Da):17,730
Last modified:January 9, 2007 - v3
Checksum:iC8A665A4B720A158
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
PIRiT09188.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. No translation available.
AP009048 Genomic DNA. No translation available.
PIRiT09188.

3D structure databases

ProteinModelPortaliP77184.
SMRiP77184.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-48047N.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Organism-specific databases

EcoGeneiEG14315. lomR.

Family and domain databases

Gene3Di2.40.160.20. 2 hits.
InterProiIPR000758. Enterovir_OMP.
IPR011250. OMP/PagP_b-brl.
[Graphical view]
PfamiPF06316. Ail_Lom. 2 hits.
[Graphical view]
PRINTSiPR00316. ENTEROVIROMP.
SUPFAMiSSF56925. SSF56925. 2 hits.
PROSITEiPS00695. ENT_VIR_OMP_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLOMR_ECOLI
AccessioniPrimary (citable) accession number: P77184
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 9, 2007
Last sequence update: January 9, 2007
Last modified: November 2, 2016
This is version 72 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Miscellaneous

This protein is encoded on Rac prophage.

Caution

Could be the product of a pseudogene. The sequence shown here is interrupted by an IS5Y insertion sequence.Curated

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.