Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Uncharacterized HTH-type transcriptional regulator YdcI

Gene

ydcI

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi28 – 47H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

  • bacterial-type proximal promoter sequence-specific DNA binding Source: GO_Central
  • DNA binding Source: EcoCyc
  • DNA binding transcription factor activity Source: InterPro
  • sequence-specific DNA binding Source: EcoCyc

GO - Biological processi

  • negative regulation of transcription, DNA-templated Source: EcoCyc
  • transcription, DNA-templated Source: EcoCyc

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciEcoCyc:G6737-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator YdcI
Gene namesi
Name:ydcI
Ordered Locus Names:b1422, JW5226
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13752 ydcI

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001057831 – 307Uncharacterized HTH-type transcriptional regulator YdcIAdd BLAST307

Proteomic databases

EPDiP77171
PaxDbiP77171
PRIDEiP77171

Interactioni

Protein-protein interaction databases

BioGridi4260183, 10 interactors
STRINGi316385.ECDH10B_1550

Structurei

3D structure databases

ProteinModelPortaliP77171
SMRiP77171
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini11 – 68HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

eggNOGiENOG4105DDW Bacteria
ENOG410YQ2R LUCA
HOGENOMiHOG000233516
InParanoidiP77171
OMAiLFVQCGI
PhylomeDBiP77171

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR005119 LysR_subst-bd
IPR000847 Tscrpt_reg_HTH_LysR
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF00126 HTH_1, 1 hit
PF03466 LysR_substrate, 1 hit
PRINTSiPR00039 HTHLYSR
SUPFAMiSSF46785 SSF46785, 1 hit
PROSITEiView protein in PROSITE
PS50931 HTH_LYSR, 1 hit

Sequencei

Sequence statusi: Complete.

P77171-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKNSLFSQR IRLRHLHTFV AVAQQGTLGR AAETLNLSQP ALSKTLNELE
60 70 80 90 100
QLTGARLFER GRQGAQLTLP GEQFLTHAVR VLDAINTAGR SLHRKEGLNN
110 120 130 140 150
DVVRVGALPT AALGILPSVI GQFHQQQKET TLQVATMSNP MILAGLKTGE
160 170 180 190 200
IDIGIGRMSD PELMTGLNYE LLFLESLKLV VRPNHPLLQE NVTLSRVLEW
210 220 230 240 250
PVVVSPEGTA PRQHSDALVQ SQGCKIPSGC IETLSASLSR QLTVEYDYVW
260 270 280 290 300
FVPSGAVKDD LRHATLVALP VPGHGAGEPI GILTRVDATF SSGCQLMINA

IRKSMPF
Length:307
Mass (Da):33,402
Last modified:December 15, 1998 - v2
Checksum:i186FCA75B38F2A43
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC74504.2
AP009048 Genomic DNA Translation: BAA15045.2
PIRiA64894
RefSeqiNP_415939.2, NC_000913.3
WP_000414567.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC74504; AAC74504; b1422
BAA15045; BAA15045; BAA15045
GeneIDi948865
KEGGiecj:JW5226
eco:b1422
PATRICifig|1411691.4.peg.848

Entry informationi

Entry nameiYDCI_ECOLI
AccessioniPrimary (citable) accession number: P77171
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: December 15, 1998
Last modified: March 28, 2018
This is version 125 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene

Cookie policy

We would like to use anonymized google analytics cookies to gather statistics on how uniprot.org is used in aggregate. Learn more

UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health